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Shotgun sequencing

Homogeneity among glyphosate-resistant Amaranthus palmeri in geographically distant locations

William T. Molin, Eric L. Patterson, Christopher A. Saski

published 09 Sep 2020

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Advantages of an easy-to-use DNA extraction method for minimal-destructive analysis of collection specimens

Franziska Patzold, Alberto Zilli, Anna K. Hundsdoerfer

published 08 Jul 2020

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Ancestral mitogenome capture of the Southeast Asian banded linsang

Johanna L. A. Paijmans, Axel Barlow, Kirstin Henneberger, Joerns Fickel, Michael Hofreiter, Daniel W. G. Foerster

published 30 Jun 2020

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Triclosan has a robust, yet reversible impact on human gut microbial composition in vitro

Karley K. Mahalak, Jenni Firrman, Jung-Jin Lee, Kyle Bittinger, Alberto Nuñez, Lisa M. Mattei, Huanjia Zhang, Bryton Fett, Jamshed Bobokalonov, Gustavo Arango-Argoty, Liqing Zhang, Guodong Zhang, Lin Shu Liu

published 25 Jun 2020

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Crewmember microbiome may influence microbial composition of ISS habitable surfaces

Aram Avila-Herrera, James Thissen, Camilla Urbaniak, Nicholas A. Be, David J. Smith, Fathi Karouia, Satish Mehta, Kasthuri Venkateswaran, Crystal Jaing

published 29 Apr 2020

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Longitudinal changes in the nasopharyngeal resistome of South African infants using shotgun metagenomic sequencing

Rendani I. Manenzhe, Felix S. Dube, Meredith Wright, Katie Lennard, Heather J. Zar, Stephanie Mounaud, William C. Nierman, Mark P. Nicol, Clinton Moodley

published 22 Apr 2020

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A restriction enzyme reduced representation sequencing approach for low-cost, high-throughput metagenome profiling

Melanie K. Hess, Suzanne J. Rowe, Tracey C. Van Stijn, Hannah M. Henry, Sharon M. Hickey, Rudiger Brauning, Alan F. McCulloch, Andrew S. Hess, Michelle R. Kirk, Sandeep Kumar, Cesar Pinares-Patiño, Sandra Kittelmann, Graham R. Wood, Peter H. Janssen, John C. McEwan

published 03 Apr 2020

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Microbial resolution of whole genome shotgun and 16S amplicon metagenomic sequencing using publicly available NEON data

Kyle D. Brumfield, Anwar Huq, Rita R. Colwell, James L. Olds, Menu B. Leddy

published 13 Feb 2020

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Development of a SimpleProbe real-Time PCR Assay for rapid detection and identification of the US novel urethrotropic clade of Neisseria meningitidis ST-11 (US_NmUC)

Evelyn Toh, James A. Williams, Brahim Qadadri, Aaron Ermel, David E. Nelson

published 10 Feb 2020

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Functional dynamics of bacterial species in the mouse gut microbiome revealed by metagenomic and metatranscriptomic analyses

Youn Wook Chung, Ho-Jin Gwak, Sungmin Moon, Mina Rho, Ji-Hwan Ryu

published 24 Jan 2020

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Characterization of black patina from the Tiber River embankments using Next-Generation Sequencing

Federica Antonelli, Alfonso Esposito, Ludovica Calvo, Valerio Licursi, Philippe Tisseyre, Sandra Ricci, Manuela Romagnoli, Silvano Piazza, Francesca Guerrieri

published 09 Jan 2020

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California condor microbiomes: Bacterial variety and functional properties in captive-bred individuals

Lindsey Jacobs, Benjamin H. McMahon, Joel Berendzen, Jonathan Longmire, Cheryl Gleasner, Nicolas W. Hengartner, Momchilo Vuyisich, Judith R. Cohn, Marti Jenkins, Andrew W. Bartlow, Jeanne M. Fair

published 11 Dec 2019

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Exploring thematic structure and predicted functionality of 16S rRNA amplicon data

Stephen Woloszynek, Joshua Chang Mell, Zhengqiao Zhao, Gideon Simpson, Michael P. O’Connor, Gail L. Rosen

published 11 Dec 2019

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