Advertisement

Browse Subject Areas

?

Click through the PLOS taxonomy to find articles in your field.

For more information about PLOS Subject Areas, click here.

Shotgun sequencing

AirDNA sampler: An efficient and simple device enabling high-yield, high-quality airborne environment DNA for metagenomic applications

Piyanun Harnpicharnchai, Panyapon Pumkaeo, Paopit Siriarchawatana, Somsak Likhitrattanapisal, Sermsiri Mayteeworakoon, Lily Ingsrisawang, Worawongsin Boonsin, Lily Eurwilaichitr, Supawadee Ingsriswang

published 29 Jun 2023

Loading metrics information...

Metrics unavailable. Please check back later.

Distinctive microbial community and genome structure in coastal seawater from a human-made port and nearby offshore island in northern Taiwan facing the Northwestern Pacific Ocean

Chi-Yu Shih, Shiow-Yi Chen, Chun-Ru Hsu, Ching-Hsiang Chin, Wei-Chih Chiu, Mei-Hung Chang, Lee-Kuo Kang, Cing-Han Yang, Tun-Wen Pai, Chin-Hwa Hu, Pang-Hung Hsu, Wen-Shyong Tzou

published 09 Jun 2023

Loading metrics information...

Metrics unavailable. Please check back later.

The selection of software and database for metagenomics sequence analysis impacts the outcome of microbial profiling and pathogen detection

Ruijie Xu, Sreekumari Rajeev, Liliana C. M. Salvador

published 07 Apr 2023

Loading metrics information...

Metrics unavailable. Please check back later.

Combining vertebrate mitochondrial 12S rRNA gene sequencing and shotgun metagenomic sequencing to investigate the diet of the leopard cat (Prionailurus bengalensis) in Korea

Cheolwoon Woo, Priyanka Kumari, Kyung Yeon Eo, Woo-Shin Lee, Junpei Kimura, Naomichi Yamamoto

published 31 Jan 2023

Loading metrics information...

Metrics unavailable. Please check back later.

Drastic reduction of false positive species in samples of insects by intersecting the default output of two popular metagenomic classifiers

Lidia Garrido-Sanz, Miquel Àngel Senar, Josep Piñol

published 25 Oct 2022

Loading metrics information...

Metrics unavailable. Please check back later.

Metagenomic shotgun sequencing of blood to identify bacteria and viruses in leukemic febrile neutropenia

Prakhar Vijayvargiya, Adeline Feri, Mathilde Mairey, Cécile Rouillon, Patricio R. Jeraldo, Zerelda Esquer Garrigos, Matthew J. Thoendel, Kerryl E. Greenwood-Quaintance, M. Rizwan Sohail, Priya Sampathkumar, Megan T. Spychalla, A. K. Stewart, Mrinal M. Patnaik, Aaron J. Tande, Stéphane Cruveiller, Irene Hannet, Pascale Beurdeley, Robin Patel

published 16 Jun 2022

Loading metrics information...

Metrics unavailable. Please check back later.

SHIMS 3.0: Highly efficient single-haplotype iterative mapping and sequencing using ultra-long nanopore reads

Daniel W. Bellott, Ting-Jan Cho, Emily K. Jackson, Helen Skaletsky, Jennifer F. Hughes, David C. Page

published 14 Jun 2022

Loading metrics information...

Metrics unavailable. Please check back later.

ASPICov: An automated pipeline for identification of SARS-Cov2 nucleotidic variants

Valentin Tilloy, Pierre Cuzin, Laura Leroi, Emilie Guérin, Patrick Durand, Sophie Alain

published 26 Jan 2022

Loading metrics information...

Metrics unavailable. Please check back later.

BIOME-Preserve: A novel storage and transport medium for preserving anaerobic microbiota samples for culture recovery

Embriette R. Hyde, Hiram Lozano, Steven Cox

published 21 Jan 2022

Loading metrics information...

Metrics unavailable. Please check back later.

A shotgun metagenomic investigation of the microbiota of udder cleft dermatitis in comparison to healthy skin in dairy cows

Lisa Ekman, Elisabeth Bagge, Ann Nyman, Karin Persson Waller, Märit Pringle, Bo Segerman

published 02 Dec 2020

Loading metrics information...

Metrics unavailable. Please check back later.

Perturbation of the human gastrointestinal tract microbial ecosystem by oral drugs to treat chronic disease results in a spectrum of individual specific patterns of extinction and persistence of dominant microbial strains

Hyunmin Koo, Casey D. Morrow

published 01 Dec 2020

Loading metrics information...

Metrics unavailable. Please check back later.

Shotgun metagenome sequencing identification of a set of genes encoded by Actinomyces associated with medication-related osteonecrosis of the jaw

Hiroko Yahara, Akimitsu Hiraki, Yutaka Maruoka, Aki Hirabayashi, Masato Suzuki, Koji Yahara

published 30 Nov 2020

Loading metrics information...

Metrics unavailable. Please check back later.

Analysis of biliary MICRObiota in hepatoBILIOpancreatic diseases compared to healthy people [MICROBILIO]: Study protocol

Fernanda Sayuri do Nascimento, Milena Oliveira Suzuki, João Victor Taba, Vitoria Carneiro de Mattos, Leonardo Zumerkorn Pipek, Eugênia Machado Carneiro D’Albuquerque, Leandro Iuamoto, Alberto Meyer, Wellington Andraus, João Renato Rebello Pinho, Eduardo Guimarães Hourneaux de Moura, João Carlos Setubal, Luiz Augusto Carneiro-D’Albuquerque

published 19 Nov 2020

Loading metrics information...

Metrics unavailable. Please check back later.

Advertisement

Create a weekly email alert for: Shotgun sequencing

You can change these options by clicking profile then "Alerts and Notifications"