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Shotgun sequencing

Metagenomic shotgun sequencing of blood to identify bacteria and viruses in leukemic febrile neutropenia

Prakhar Vijayvargiya, Adeline Feri, Mathilde Mairey, Cécile Rouillon, Patricio R. Jeraldo, Zerelda Esquer Garrigos, Matthew J. Thoendel, Kerryl E. Greenwood-Quaintance, M. Rizwan Sohail, Priya Sampathkumar, Megan T. Spychalla, A. K. Stewart, Mrinal M. Patnaik, Aaron J. Tande, Stéphane Cruveiller, Irene Hannet, Pascale Beurdeley, Robin Patel

published 16 Jun 2022

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SHIMS 3.0: Highly efficient single-haplotype iterative mapping and sequencing using ultra-long nanopore reads

Daniel W. Bellott, Ting-Jan Cho, Emily K. Jackson, Helen Skaletsky, Jennifer F. Hughes, David C. Page

published 14 Jun 2022

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ASPICov: An automated pipeline for identification of SARS-Cov2 nucleotidic variants

Valentin Tilloy, Pierre Cuzin, Laura Leroi, Emilie Guérin, Patrick Durand, Sophie Alain

published 26 Jan 2022

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BIOME-Preserve: A novel storage and transport medium for preserving anaerobic microbiota samples for culture recovery

Embriette R. Hyde, Hiram Lozano, Steven Cox

published 21 Jan 2022

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A shotgun metagenomic investigation of the microbiota of udder cleft dermatitis in comparison to healthy skin in dairy cows

Lisa Ekman, Elisabeth Bagge, Ann Nyman, Karin Persson Waller, Märit Pringle, Bo Segerman

published 02 Dec 2020

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Perturbation of the human gastrointestinal tract microbial ecosystem by oral drugs to treat chronic disease results in a spectrum of individual specific patterns of extinction and persistence of dominant microbial strains

Hyunmin Koo, Casey D. Morrow

published 01 Dec 2020

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Shotgun metagenome sequencing identification of a set of genes encoded by Actinomyces associated with medication-related osteonecrosis of the jaw

Hiroko Yahara, Akimitsu Hiraki, Yutaka Maruoka, Aki Hirabayashi, Masato Suzuki, Koji Yahara

published 30 Nov 2020

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Analysis of biliary MICRObiota in hepatoBILIOpancreatic diseases compared to healthy people [MICROBILIO]: Study protocol

Fernanda Sayuri do Nascimento, Milena Oliveira Suzuki, João Victor Taba, Vitoria Carneiro de Mattos, Leonardo Zumerkorn Pipek, Eugênia Machado Carneiro D’Albuquerque, Leandro Iuamoto, Alberto Meyer, Wellington Andraus, João Renato Rebello Pinho, Eduardo Guimarães Hourneaux de Moura, João Carlos Setubal, Luiz Augusto Carneiro-D’Albuquerque

published 19 Nov 2020

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Zero-Inflated gaussian mixed models for analyzing longitudinal microbiome data

Xinyan Zhang, Boyi Guo, Nengjun Yi

published 09 Nov 2020

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Homogeneity among glyphosate-resistant Amaranthus palmeri in geographically distant locations

William T. Molin, Eric L. Patterson, Christopher A. Saski

published 09 Sep 2020

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Advantages of an easy-to-use DNA extraction method for minimal-destructive analysis of collection specimens

Franziska Patzold, Alberto Zilli, Anna K. Hundsdoerfer

published 08 Jul 2020

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Ancestral mitogenome capture of the Southeast Asian banded linsang

Johanna L. A. Paijmans, Axel Barlow, Kirstin Henneberger, Joerns Fickel, Michael Hofreiter, Daniel W. G. Foerster

published 30 Jun 2020

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Triclosan has a robust, yet reversible impact on human gut microbial composition in vitro

Karley K. Mahalak, Jenni Firrman, Jung-Jin Lee, Kyle Bittinger, Alberto Nuñez, Lisa M. Mattei, Huanjia Zhang, Bryton Fett, Jamshed Bobokalonov, Gustavo Arango-Argoty, Liqing Zhang, Guodong Zhang, Lin Shu Liu

published 25 Jun 2020

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