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Shotgun sequencing

Meraculous: De Novo Genome Assembly with Short Paired-End Reads

Jarrod A. Chapman, Isaac Ho, [ ... ], Daniel S. Rokhsar

Species Identification and Profiling of Complex Microbial Communities Using Shotgun Illumina Sequencing of 16S rRNA Amplicon Sequences

Swee Hoe Ong, Vinutha Uppoor Kukkillaya, [ ... ], Niranjan Nagarajan

Piphillin: Improved Prediction of Metagenomic Content by Direct Inference from Human Microbiomes

Shoko Iwai, Thomas Weinmaier, [ ... ], Todd Z. DeSantis

Accurate Genome Relative Abundance Estimation Based on Shotgun Metagenomic Reads

Li C. Xia, Jacob A. Cram, [ ... ], Fengzhu Sun

A Filtering Method to Generate High Quality Short Reads Using Illumina Paired-End Technology

A. Murat Eren, Joseph H. Vineis, Hilary G. Morrison, Mitchell L. Sogin

Microbial resolution of whole genome shotgun and 16S amplicon metagenomic sequencing using publicly available NEON data

Kyle D. Brumfield, Anwar Huq, [ ... ], Menu B. Leddy

Estimating genetic kin relationships in prehistoric populations

Jose Manuel Monroy Kuhn, Mattias Jakobsson, Torsten Günther

Sequencing Degraded DNA from Non-Destructively Sampled Museum Specimens for RAD-Tagging and Low-Coverage Shotgun Phylogenetics

Mandy Man-Ying Tin, Evan Philip Economo, Alexander Sergeyevich Mikheyev

Rapid Microsatellite Identification from Illumina Paired-End Genomic Sequencing in Two Birds and a Snake

Todd A. Castoe, Alexander W. Poole, [ ... ], David D. Pollock

Modulations of the Chicken Cecal Microbiome and Metagenome in Response to Anticoccidial and Growth Promoter Treatment

Jessica L. Danzeisen, Hyeun Bum Kim, [ ... ], Timothy J. Johnson

Optimizing Read Mapping to Reference Genomes to Determine Composition and Species Prevalence in Microbial Communities

John Martin, Sean Sykes, [ ... ], Makedonka Mitreva

A Molecular Approach to the Sexing of the Triple Burial at the Upper Paleolithic Site of Dolní Věstonice

Alissa Mittnik, Chuan-Chao Wang, Jiří Svoboda, Johannes Krause

Use of Four Next-Generation Sequencing Platforms to Determine HIV-1 Coreceptor Tropism

John Archer, Jan Weber, [ ... ], Miguel E. Quiñones-Mateu

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