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Shotgun sequencing

Perturbations in gut microbiota composition in schizophrenia

YiMeng Wang, SiGuo Bi, XiaoLong Li, YuTao Zhong, DongDong Qi

published 03 Jul 2024

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Diverse patterns of correspondence between protist metabarcodes and protist metagenome-assembled genomes

Daryna Zavadska, Nicolas Henry, Adrià Auladell, Cédric Berney, Daniel J. Richter

published 06 Jun 2024

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Shotgun metagenomic analysis of saliva microbiome suggests Mogibacterium as a factor associated with chronic bacterial osteomyelitis

Hiroko Yahara, Souichi Yanamoto, Miho Takahashi, Yuji Hamada, Takuya Asaka, Yoshimasa Kitagawa, Kuniyasu Moridera, Kazuma Noguchi, Yutaka Maruoka, Koji Yahara

published 06 May 2024

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Revealing the microbiome diversity and biocontrol potential of field Aedes ssp.: Implications for disease vector management

Apolinar M. Hernández, Luis D. Alcaraz, Cristóbal Hernández-Álvarez, Miguel F. Romero, Angélica Jara-Servín, Hugo Barajas, Carlos M. . Ramírez, Mariana Peimbert

published 29 Apr 2024

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Comparison of qPCR and metagenomic sequencing methods for quantifying antibiotic resistance genes in wastewater

Gihan Daw Elbait, Mariane Daou, Miral Abuoudah, Ahmed Elmekawy, Shadi W. Hasan, Dean B. Everett, Habiba Alsafar, Andreas Henschel, Ahmed F. Yousef

published 05 Apr 2024

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High-throughput DNA extraction and cost-effective miniaturized metagenome and amplicon library preparation of soil samples for DNA sequencing

Thomas Bygh Nymann Jensen, Sebastian Mølvang Dall, Simon Knutsson, Søren Michael Karst, Mads Albertsen

published 04 Apr 2024

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Shotgun metagenomics to investigate unknown viral etiologies of pediatric meningoencephalitis

Andrea Castellot, Juan Camacho, María Dolores Fernández-García, David Tarragó

published 21 Dec 2023

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Are the predicted known bacterial strains in a sample really present? A case study

Minerva Ventolero, Saidi Wang, Haiyan Hu, Xiaoman Li

published 13 Oct 2023

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Tracking gut microbiome and bloodstream infection in critically ill adults

Christopher H. Gu, Layla A. Khatib, Ayannah S. Fitzgerald, Jevon Graham-Wooten, Caroline A. Ittner, Scott Sherrill-Mix, YuChung Chuang, Laurel J. Glaser, Nuala J. Meyer, Frederic D. Bushman, Ronald G. Collman

published 10 Oct 2023

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Shotgun metagenomics captures more microbial diversity than targeted 16S rRNA gene sequencing for field specimens and preserved museum specimens

Joseph D. Madison, Brandon C. LaBumbard, Douglas C. Woodhams

published 19 Sep 2023

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Abundance and prevalence of ESBL coding genes in patients undergoing first line eradication therapy for Helicobacter pylori

Dita Gudra, Ivars Silamikelis, Janis Pjalkovskis, Ilva Danenberga, Darta Pupola, Girts Skenders, Maija Ustinova, Kaspars Megnis, Marcis Leja, Reinis Vangravs, Davids Fridmanis

published 10 Aug 2023

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Validation of the shotgun metabarcoding approach for comprehensively identifying herbal products containing plant, fungal, and animal ingredients

Zhaolei Zhang, Weishan Mu, Weijun Kong, Jiali Liu, Jingyi Zhao, Qing Zhao, Mengmeng Shi, Hongye Zhao, Jinxin Liu, Linchun Shi

published 03 Jul 2023

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AirDNA sampler: An efficient and simple device enabling high-yield, high-quality airborne environment DNA for metagenomic applications

Piyanun Harnpicharnchai, Panyapon Pumkaeo, Paopit Siriarchawatana, Somsak Likhitrattanapisal, Sermsiri Mayteeworakoon, Lily Ingsrisawang, Worawongsin Boonsin, Lily Eurwilaichitr, Supawadee Ingsriswang

published 29 Jun 2023

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