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Shotgun sequencing

Optimizing Read Mapping to Reference Genomes to Determine Composition and Species Prevalence in Microbial Communities

John Martin, Sean Sykes, Sarah Young, Karthik Kota, Ravi Sanka, Nihar Sheth, Joshua Orvis, Erica Sodergren, Zhengyuan Wang, George M. Weinstock, Makedonka Mitreva

published 13 Jun 2012

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Novel Bacterial Taxa in the Human Microbiome

Kristine M. Wylie, Rebecca M. Truty, Thomas J. Sharpton, Kathie A. Mihindukulasuriya, Yanjiao Zhou, Hongyu Gao, Erica Sodergren, George M. Weinstock, Katherine S. Pollard

published 13 Jun 2012

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Rapid Microsatellite Identification from Illumina Paired-End Genomic Sequencing in Two Birds and a Snake

Todd A. Castoe, Alexander W. Poole, A. P. Jason de Koning, Kenneth L. Jones, Diana F. Tomback, Sara J. Oyler-McCance, Jennifer A. Fike, Stacey L. Lance, Jeffrey W. Streicher, Eric N. Smith, David D. Pollock

published 14 Feb 2012

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Beyond Bacteria: A Study of the Enteric Microbial Consortium in Extremely Low Birth Weight Infants

Mariam Susan LaTuga, Joseph Christopher Ellis, Charles Michael Cotton, Ronald N. Goldberg, James L. Wynn, Robert B. Jackson, Patrick C. Seed

published 08 Dec 2011

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Accurate Genome Relative Abundance Estimation Based on Shotgun Metagenomic Reads

Li C. Xia, Jacob A. Cram, Ting Chen, Jed A. Fuhrman, Fengzhu Sun

published 06 Dec 2011

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Modulations of the Chicken Cecal Microbiome and Metagenome in Response to Anticoccidial and Growth Promoter Treatment

Jessica L. Danzeisen, Hyeun Bum Kim, Richard E. Isaacson, Zheng Jin Tu, Timothy J. Johnson

published 16 Nov 2011

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Decontamination of MDA Reagents for Single Cell Whole Genome Amplification

Tanja Woyke, Alexander Sczyrba, Janey Lee, Christian Rinke, Damon Tighe, Scott Clingenpeel, Rex Malmstrom, Ramunas Stepanauskas, Jan-Fang Cheng

published 20 Oct 2011

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Practical Tools to Implement Massive Parallel Pyrosequencing of PCR Products in Next Generation Molecular Diagnostics

Kim De Leeneer, Joachim De Schrijver, Lieven Clement, Machteld Baetens, Steve Lefever, Sarah De Keulenaer, Wim Van Criekinge, Dieter Deforce, Filip Van Nieuwerburgh, Sofie Bekaert, Filip Pattyn, Bram De Wilde, Paul Coucke, Jo Vandesompele, Kathleen Claes, Jan Hellemans

published 30 Sep 2011

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Meraculous: De Novo Genome Assembly with Short Paired-End Reads

Jarrod A. Chapman, Isaac Ho, Sirisha Sunkara, Shujun Luo, Gary P. Schroth, Daniel S. Rokhsar

published 18 Aug 2011

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An Effective Method to Purify Plasmodium falciparum DNA Directly from Clinical Blood Samples for Whole Genome High-Throughput Sequencing

Sarah Auburn, Susana Campino, Taane G. Clark, Abdoulaye A. Djimde, Issaka Zongo, Robert Pinches, Magnus Manske, Valentina Mangano, Daniel Alcock, Elisa Anastasi, Gareth Maslen, Bronwyn MacInnis, Kirk Rockett, David Modiano, Christopher I. Newbold, Ogobara K. Doumbo, Jean Bosco Ouédraogo, Dominic P. Kwiatkowski

published 18 Jul 2011

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Castor Bean Organelle Genome Sequencing and Worldwide Genetic Diversity Analysis

Maximo Rivarola, Jeffrey T. Foster, Agnes P. Chan, Amber L. Williams, Danny W. Rice, Xinyue Liu, Admasu Melake-Berhan, Heather Huot Creasy, Daniela Puiu, M. J. Rosovitz, Hoda M. Khouri, Stephen M. Beckstrom-Sternberg, Gerard J. Allan, Paul Keim, Jacques Ravel, Pablo D. Rabinowicz

published 07 Jul 2011

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ExCyto PCR Amplification

Vinay Dhodda, Ronald Godiska, Jeffrey D. VanWye, David Mead, Rebecca Hochstein, Lynne Sheets, Sarah Vande Zande, Chris Niebauer, Douglas L. Crawford, Marjorie F. Oleksiak

published 08 Sep 2010

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Cost-Effective Sequencing of Full-Length cDNA Clones Powered by a De Novo-Reference Hybrid Assembly

Reginaldo M. Kuroshu, Junichi Watanabe,, Sumio Sugano, Shinichi Morishita, Yutaka Suzuki, Masahiro Kasahara

published 07 May 2010

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