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Shotgun sequencing

Noninvasive Prenatal Molecular Karyotyping from Maternal Plasma

Stephanie C. Y. Yu, Peiyong Jiang, Kwong W. Choy, Kwan Chee Allen Chan, Hye-Sung Won, Wing C. Leung, Elizabeth T. Lau, Mary H. Y. Tang, Tak Y. Leung, Yuk Ming Dennis Lo, Rossa W. K. Chiu

published 17 Apr 2013

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Species Identification and Profiling of Complex Microbial Communities Using Shotgun Illumina Sequencing of 16S rRNA Amplicon Sequences

Swee Hoe Ong, Vinutha Uppoor Kukkillaya, Andreas Wilm, Christophe Lay, Eliza Xin Pei Ho, Louie Low, Martin Lloyd Hibberd, Niranjan Nagarajan

published 08 Apr 2013

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Mitochondrial Phylogenomics of Modern and Ancient Equids

Julia T. Vilstrup, Andaine Seguin-Orlando, Mathias Stiller, Aurelien Ginolhac, Maanasa Raghavan, Sandra C. A. Nielsen, Jacobo Weinstock, Duane Froese, Sergei K. Vasiliev, Nikolai D. Ovodov, Joel Clary, Kristofer M. Helgen, Robert C. Fleischer, Alan Cooper, Beth Shapiro, Ludovic Orlando

published 20 Feb 2013

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Microsatellites for Next-Generation Ecologists: A Post-Sequencing Bioinformatics Pipeline

Iria Fernandez-Silva, Jonathan Whitney, Benjamin Wainwright, Kimberly R. Andrews, Heather Ylitalo-Ward, Brian W. Bowen, Robert J. Toonen, Erica Goetze, Stephen A. Karl

published 12 Feb 2013

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OTU Analysis Using Metagenomic Shotgun Sequencing Data

Xiaolin Hao, Ting Chen

published 26 Nov 2012

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Two Different High Throughput Sequencing Approaches Identify Thousands of De Novo Genomic Markers for the Genetically Depleted Bornean Elephant

Reeta Sharma, Benoit Goossens, Célia Kun-Rodrigues, Tatiana Teixeira, Nurzhafarina Othman, Jason Q. Boone, Nathaniel K. Jue, Craig Obergfell, Rachel J. O'Neill, Lounès Chikhi

published 21 Nov 2012

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Use of Four Next-Generation Sequencing Platforms to Determine HIV-1 Coreceptor Tropism

John Archer, Jan Weber, Kenneth Henry, Dane Winner, Richard Gibson, Lawrence Lee, Ellen Paxinos, Eric J. Arts, David L. Robertson, Larry Mimms, Miguel E. Quiñones-Mateu

published 14 Nov 2012

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CREST – Classification Resources for Environmental Sequence Tags

Anders Lanzén, Steffen L. Jørgensen, Daniel H. Huson, Markus Gorfer, Svenn Helge Grindhaug, Inge Jonassen, Lise Øvreås, Tim Urich

published 08 Nov 2012

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Choosing the Best Plant for the Job: A Cost-Effective Assay to Prescreen Ancient Plant Remains Destined for Shotgun Sequencing

Nathan Wales, J. Alberto Romero-Navarro, Enrico Cappellini, M. Thomas P Gilbert

published 20 Sep 2012

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Genometa - A Fast and Accurate Classifier for Short Metagenomic Shotgun Reads

Colin F. Davenport, Jens Neugebauer, Nils Beckmann, Benedikt Friedrich, Burim Kameri, Svea Kokott, Malte Paetow, Björn Siekmann, Matthias Wieding-Drewes, Markus Wienhöfer, Stefan Wolf, Burkhard Tümmler, Volker Ahlers, Frauke Sprengel

published 21 Aug 2012

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An Improvement of Shotgun Proteomics Analysis by Adding Next-Generation Sequencing Transcriptome Data in Orange

Jiaping Song, Renjie Sun, Dazhi Li, Fengji Tan, Xin Li, Pingping Jiang, Xinjie Huang, Liang Lin, Ziniu Deng, Yong Zhang

published 29 Jun 2012

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Reconstruction of Ribosomal RNA Genes from Metagenomic Data

Lu Fan, Kerensa McElroy, Torsten Thomas

published 27 Jun 2012

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Evaluation of 16S rDNA-Based Community Profiling for Human Microbiome Research

Jumpstart Consortium Human Microbiome Project Data Generation Working Group

published 13 Jun 2012

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