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Shotgun sequencing

phyloseq: An R Package for Reproducible Interactive Analysis and Graphics of Microbiome Census Data

Paul J. McMurdie, Susan Holmes

Evaluation of 16S rDNA-Based Community Profiling for Human Microbiome Research

Jumpstart Consortium Human Microbiome Project Data Generation Working Group

Optimal Ancient DNA Yields from the Inner Ear Part of the Human Petrous Bone

Ron Pinhasi, Daniel Fernandes, [ ... ], Michael Hofreiter

Whole-Genome Sequencing and Assembly with High-Throughput, Short-Read Technologies

Andreas Sundquist, Mostafa Ronaghi, [ ... ], Serafim Batzoglou

BBMerge – Accurate paired shotgun read merging via overlap

Brian Bushnell, Jonathan Rood, Esther Singer

Assembling the Marine Metagenome, One Cell at a Time

Tanja Woyke, Gary Xie, [ ... ], Ramunas Stepanauskas

Human and Environmental Impacts on River Sediment Microbial Communities

Sean M. Gibbons, Edwin Jones, [ ... ], Jack A. Gilbert

Filthy lucre: A metagenomic pilot study of microbes found on circulating currency in New York City

Julia M. Maritz, Steven A. Sullivan, [ ... ], Jane M. Carlton

Novel Bacterial Taxa in the Human Microbiome

Kristine M. Wylie, Rebecca M. Truty, [ ... ], Katherine S. Pollard

Comparing Apples and Oranges?: Next Generation Sequencing and Its Impact on Microbiome Analysis

Adam G. Clooney, Fiona Fouhy, [ ... ], Marcus J. Claesson

Hybridization Capture Using RAD Probes (hyRAD), a New Tool for Performing Genomic Analyses on Collection Specimens

Tomasz Suchan, Camille Pitteloud, [ ... ], Nadir Alvarez

Mitochondrial Phylogenomics of Modern and Ancient Equids

Julia T. Vilstrup, Andaine Seguin-Orlando, [ ... ], Ludovic Orlando

Colorectal Cancer and the Human Gut Microbiome: Reproducibility with Whole-Genome Shotgun Sequencing

Emily Vogtmann, Xing Hua, [ ... ], Rashmi Sinha

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