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Sequencing techniques

TBpore cluster: A novel phylogenetic pipeline for tuberculosis transmission studies using nanopore next-generation sequencing data

Sophie Gagnon, Emmanuelle Ametepe, Floriane Point, William Cloutier Charette, Arpita Chakravarti, Paul Rivest, Pierre-Marie Akochy, Hafid Soualhine, Zamin Iqbal, Michael B. Hall, Simon Grandjean Lapierre

published 16 Jun 2025

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The diagnostic accuracy of nanopore sequencing in Tuberculous Lymphadenitis: Systematic review and meta-analysis protocol

Liwei Yao, Caifang Bu, Lijun Xiang

published 10 Jun 2025

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Hepatic transcriptome profiling unveils candidate genes in cattle with liver abscesses under the influence of beef genetics in dairy cattle

Luana D. Felizari, Sydney M. Bowman, Chiquito J. Crasto, Jhones O. Sarturi, Dale R. Woerner, Bradley J. Johnson

published 09 Jun 2025

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A PCR primer design method for identifying spider mite species using k-mer counting

Tomoko Matsuda, Hironori Sakamoto, Takumi Kayukawa, Yasuki Kitashima, Toshinori Kozaki, Tetsuo Gotoh

published 09 Jun 2025

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The hepatic transcriptome is differentially regulated by a standardized meal in healthy individuals compared to patients with fatty liver disease

Josephine Grandt, Christian D. Johansen, Anne-Sofie H. Jensen, Mikkel P. Werge, Elias B. Rashu, Andreas Møller, Anders E. Junker, Lise Hobolth, Christian Mortensen, Mogens Vyberg, Reza Rafiolsadat Serizawa, Søren Møller, Lise Lotte Gluud, Nicolai J. Wewer Albrechtsen

published 09 Jun 2025

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A descriptor-free machine learning framework to improve antigen discovery for bacterial pathogens

Marco Podda, Castrense Savojardo, Pier Luigi Martelli, Rita Casadio, Alina Sîrbu, Corrado Priami, Alessandro Brozzi

published 05 Jun 2025

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MAGNET-seq: A tandem PCR and hybrid capture method for enhanced target enrichment

Dongin Lee, Taehoon Kim, Duhee Bang

published 04 Jun 2025

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Adaptation of PCR-based library preparation for MGI platform for cancer mutation testing in clinical setting

P.A. Shatalov, M.P. Raygorodskaya, A.P. Shinkarkina, A.A. Traspov, A.V. Murzaeva, Y.A. Doroshenko, I.A. Leuhina, V.A. Mileyko, M. V. Ivanov, T.V. Grigoreva, A. A. Lebedeva, E.M. Veselovsky, L.D. Belyaeva, E. V. Belova, A.D. Kaprin, P.V. Shegai

published 04 Jun 2025

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Host-pathogen protein interaction studies: quality control of cDNA libraries using nanopore sequencing

Cécile Schimmich, Mathilde Gondard, Gregory Caignard, José-Carlos Valle-Casuso, Damien Vitour, François Piumi

published 30 May 2025

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Evaluation of metatranscriptomic sequencing protocols to obtain full-length RNA virus genomes from mammalian tissues

Yiqiao Li, Mariana Polychronopoulou, Ine Boonen, Antonios Fikatas, Sophie Gryseels, Anne Laudisoit, Joelle Gouy de Bellocq, Bram Vrancken, Gkikas Magiorkinis, Philippe Lemey, Magda Bletsa

published 30 May 2025

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Alpha thalassemia/mental retardation X-linked (ATRX) protein expression in human pituitary neuroendocrine tumours and its reported correlation to prognosis and clinical outcomes: A systematic review

Edward Wang, Fabio Rotondo, Michael D. Cusimano

published 29 May 2025

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Binding of transmissible gastroenteritis virus and porcine respiratory coronavirus to human and porcine aminopeptidase N receptors as an indicator of cross-species transmission

Mykyta Peka, Viktor Balatsky

published 27 May 2025

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Characterization of blood microbial population in beef calves with clinical signs of sepsis using 16S rRNA gene sequencing

Giuliano Borriello, Flaminia Valentini, Sara Ferrini, Giorgia Di Muro, Giulia Cagnotti, Elena Grego, Angela Maria Catania, Maria Cristina Stella, Ugo Ala, Patrizia Nebbia, Antonio D’Angelo, Claudio Bellino

published 23 May 2025

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