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Sequencing techniques

Transfer of endogenous small RNAs between branches of scions and rootstocks in grafted sweet cherry trees

Dongyan Zhao, Gan-yuan Zhong, Guo-qing Song

published 28 Jul 2020

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Medical oncologists’ perspectives of the Veterans Affairs National Precision Oncology Program

Vishal Vashistha, Pradeep J. Poonnen, Jane L. Snowdon, Halcyon G. Skinner, Victoria McCaffrey, Neil L. Spector, Bradley Hintze, Jill E. Duffy, Dilhan Weeraratne, Gretchen P. Jackson, Michael J. Kelley, Vimla L. Patel

published 24 Jul 2020

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Dissecting efficiency of a 5’ rapid amplification of cDNA ends (5’-RACE) approach for profiling T-cell receptor beta repertoire

Yu-Hung Lin, Sheng-Jou Hung, Yi-Lin Chen, Cheng-Han Lin, Te-Fang Kung, Yi-Chun Yeh, Joseph T. Tseng, Tsunglin Liu

published 23 Jul 2020

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Predicting gene regulatory regions with a convolutional neural network for processing double-strand genome sequence information

Koh Onimaru, Osamu Nishimura, Shigehiro Kuraku

published 23 Jul 2020

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The transcriptome of Listeria monocytogenes during co-cultivation with cheese rind bacteria suggests adaptation by induction of ethanolamine and 1,2-propanediol catabolism pathway genes

Justin M. Anast, Stephan Schmitz-Esser

published 23 Jul 2020

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The mevalonate precursor enzyme HMGCS1 is a novel marker and key mediator of cancer stem cell enrichment in luminal and basal models of breast cancer

Claire A. Walsh, Nina Akrap, Elena Garre, Ylva Magnusson, Hannah Harrison, Daniel Andersson, Emma Jonasson, Svanheidur Rafnsdottir, Hani Choudhry, Francesca Buffa, Jiannis Ragoussis, Anders Ståhlberg, Adrian Harris, Göran Landberg

published 21 Jul 2020

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Comparative transcriptome expression analysis in susceptible and resistant potato (Solanum tuberosum) cultivars to common scab (Streptomyces scabies) revealed immune priming responses in the incompatible interaction

Bourlaye Fofana, Ashok Somalraju, Sherry Fillmore, Mohsin Zaidi, David Main, Kaushik Ghose

published 16 Jul 2020

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Advantages of an easy-to-use DNA extraction method for minimal-destructive analysis of collection specimens

Franziska Patzold, Alberto Zilli, Anna K. Hundsdoerfer

published 08 Jul 2020

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Comprehensive RNA-Seq profiling of the lung transcriptome of Bashbay sheep in response to experimental Mycoplasma ovipneumoniae infection

Zhihui Du, Yanming Sun, Jixue Wang, Haiyan Liu, Yi Yang, Ning Zhao

published 08 Jul 2020

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ShAn: An easy-to-use tool for interactive and integrated variant annotation

Venkat Subramaniam Rathinakannan, Hannu-Pekka Schukov, Samuel Heron, Johanna Schleutker, Csilla Sipeky

published 07 Jul 2020

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Misidentification by farmers of the crop varieties they grow: Lessons from DNA fingerprinting of wheat in Ethiopia

Moti Jaleta, Kindie Tesfaye, Andrzej Kilian, Chilot Yirga, Endeshaw Habte, Habekiristos Beyene, Bekele Abeyo, Ayele Badebo, Olaf Erenstein

published 07 Jul 2020

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Genomic analyses of multidrug-resistant Salmonella Indiana, Typhimurium, and Enteritidis isolates using MinION and MiSeq sequencing technologies

Zhao Chen, Dai Kuang, Xuebin Xu, Narjol González-Escalona, David L. Erickson, Eric Brown, Jianghong Meng

published 02 Jul 2020

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Changes in gene expression in potato meristems treated with the sprout suppressor 1,4-dimethylnaphthalene are dependent on tuber age and dormancy status

Michael A. Campbell, Carley Gwin, Helen H. Tai, Rachael Adams

published 02 Jul 2020

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