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Sequencing techniques

Meta-2OM: A multi-classifier meta-model for the accurate prediction of RNA 2′-O-methylation sites in human RNA

Md. Harun-Or-Roshid, Nhat Truong Pham, Balachandran Manavalan, Hiroyuki Kurata

published 26 Jun 2024

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The anti-tumor activity of tangeretin in esophageal squamous cell carcinoma by inhibiting GLI2-mediated transcription of GPNMB

Dong Yang, Quan Zhang, Haoyong Kuang, Jian Liu, Sen Wu, Li Wei, Wenjian Yao

published 26 Jun 2024

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Copy number variant detection using next-generation sequencing in EYS-associated retinitis pigmentosa

Masakazu Hiraoka, Yusaku Urakawa, Kanako Kawai, Akiko Yoshida, Junichi Hosakawa, Masaki Takazawa, Akira Inaba, Satoshi Yokota, Yasuhiko Hirami, Masayo Takahashi, Osamu Ohara, Yasuo Kurimoto, Akiko Maeda

published 24 Jun 2024

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Platelet-derived microvesicles isolated from type-2 diabetes mellitus patients harbour an altered miRNA signature and drive MDA-MB-231 triple-negative breast cancer cell invasion

Anca Tutuianu, Chinedu A. Anene, Mikayla Shelton, Valerie Speirs, Donald C. Whitelaw, Joanne Thorpe, Wayne Roberts, James R. Boyne

published 20 Jun 2024

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Avirulence of a spontaneous Francisella tularensis subsp. mediasiatica prmA mutant

Vitalii Timofeev, Irina Bakhteeva, Galina Titareva, Raisa Mironova, Vera Evseeva, Tatiana Kravchenko, Angelika Sizova, Alexander Borzilov, Natalia Pavlovich, Alexander Mokrievich, Ivan Dyatlov, Gilles Vergnaud

published 18 Jun 2024

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Chromosomal analysis of single sperm cells from infertile couples with severe oligoteratozoospermia: A cross-sectional prospective study

Supitcha Sassanarakkit, Sudaporn Chamnankran, Artitaya Singwongsa, Matchuporn Sukprasert, Chonthicha Satirapod

published 14 Jun 2024

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Clinical and analytical validation of an 82-gene comprehensive genome-profiling panel for identifying and interpreting variants responsible for inherited retinal dystrophies

Jacqueline Chan, Jolyon Holdstock, John Shovelton, James Reid, Graham Speight, Duarte Molha, Venu Pullabhatla, Stephanie Carpenter, Ezam Uddin, Takanori Washio, Hiroko Sato, Yuuki Izumi, Reiko Watanabe, Hayato Niiro, Yoshiyuki Fukushima, Naoko Ashida, Takashi Hirose, Akiko Maeda

published 13 Jun 2024

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Investigating molecular descriptors in cell-penetrating peptides prediction with deep learning: Employing N, O, and hydrophobicity according to the Eisenberg scale

Juliana Auzier Seixas Feio, Ewerton Cristhian Lima de Oliveira, Claudomiro de Souza de Sales Junior, Kauê Santana da Costa, Anderson Henrique Lima e Lima

published 13 Jun 2024

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Difference in TMPRSS2 usage by Delta and Omicron variants of SARS-CoV-2: Implication for a sudden increase among children

Sosuke Kakee, Kyosuke Kanai, Akeno Tsuneki-Tokunaga, Keisuke Okuno, Noriyuki Namba, Katsuyuki Tomita, Hiroki Chikumi, Seiji Kageyama

published 13 Jun 2024

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Unraveling the impact of AXIN1 mutations on HCC development: Insights from CRISPR/Cas9 repaired AXIN1-mutant liver cancer cell lines

Ruyi Zhang, Shanshan Li, Kelly Schippers, Boaz Eimers, Jiahui Niu, Bastian V. H. Hornung, Mirjam C. G. N. van den Hout, Wilfred F. J. van Ijcken, Maikel P. Peppelenbosch, Ron Smits

published 07 Jun 2024

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Several supplementary concepts for applied category-theoretical states over an extended Petri net using an example relating to genetic coding: Toward an abstract algebraic formulation of molecular/genetic biology

Jitsuki Sawamura, Shigeru Morishita, Jun Ishigooka

published 07 Jun 2024

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Diagnostic accuracy of nanopore sequencing for the rapid diagnosis of pulmonary tuberculosis: A protocol for a systematic review and meta-analysis

Guocan Yu, Xudong Xu, Yanqin Shen, Bifei Fang

published 06 Jun 2024

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Exploring the potential of Oxford Nanopore Technologies sequencing for Mycobacterium tuberculosis sequencing: An assessment of R10 flowcells and V14 chemistry

Anzaan Dippenaar, Emilyn Costa Conceição, Felicia Wells, Johannes Loubser, Brendon Mann, Miguel De Diego Fuertes, Vincent Rennie, Robin Mark Warren, Annelies Van Rie

published 06 Jun 2024

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