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Sequencing techniques

Difference in TMPRSS2 usage by Delta and Omicron variants of SARS-CoV-2: Implication for a sudden increase among children

Sosuke Kakee, Kyosuke Kanai, Akeno Tsuneki-Tokunaga, Keisuke Okuno, Noriyuki Namba, Katsuyuki Tomita, Hiroki Chikumi, Seiji Kageyama

published 13 Jun 2024

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Unraveling the impact of AXIN1 mutations on HCC development: Insights from CRISPR/Cas9 repaired AXIN1-mutant liver cancer cell lines

Ruyi Zhang, Shanshan Li, Kelly Schippers, Boaz Eimers, Jiahui Niu, Bastian V. H. Hornung, Mirjam C. G. N. van den Hout, Wilfred F. J. van Ijcken, Maikel P. Peppelenbosch, Ron Smits

published 07 Jun 2024

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Several supplementary concepts for applied category-theoretical states over an extended Petri net using an example relating to genetic coding: Toward an abstract algebraic formulation of molecular/genetic biology

Jitsuki Sawamura, Shigeru Morishita, Jun Ishigooka

published 07 Jun 2024

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Diagnostic accuracy of nanopore sequencing for the rapid diagnosis of pulmonary tuberculosis: A protocol for a systematic review and meta-analysis

Guocan Yu, Xudong Xu, Yanqin Shen, Bifei Fang

published 06 Jun 2024

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Exploring the potential of Oxford Nanopore Technologies sequencing for Mycobacterium tuberculosis sequencing: An assessment of R10 flowcells and V14 chemistry

Anzaan Dippenaar, Emilyn Costa Conceição, Felicia Wells, Johannes Loubser, Brendon Mann, Miguel De Diego Fuertes, Vincent Rennie, Robin Mark Warren, Annelies Van Rie

published 06 Jun 2024

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Diverse patterns of correspondence between protist metabarcodes and protist metagenome-assembled genomes

Daryna Zavadska, Nicolas Henry, Adrià Auladell, Cédric Berney, Daniel J. Richter

published 06 Jun 2024

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Understanding the genetic sex-determining mechanism in Hyla eximia treefrog inferred from H-Y antigen

Aidet Ruiz, Guadalupe Cárdenas, Desiderio Velasco, Luis Ramos

published 31 May 2024

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Invasive European green crab (Carcinus maenas) predation in a Washington State estuary revealed with DNA metabarcoding

Mary C. Fisher, Emily W. Grason, Alex Stote, Ryan P. Kelly, Kate Litle, P. Sean McDonald

published 31 May 2024

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NGS method for parallel processing of high quality, damaged or fragmented input material using target enrichment

Anna Lyander, Anna Gellerbring, Moa Hägglund, Keyvan Elhami, Valtteri Wirta

published 29 May 2024

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Detection and genetic diversity of parechoviruses in children with acute flaccid paralysis in Cameroon

Daniel Kamga Njile, Emmanuel Akongnwi Mugyia, Marie Claire Endegue-Zanga, Jude Anfumbom Kfutwah, Marlise Dontsop Djoumetio, Boyomo Onana, Ousmane Madiagne Diop, Richard Njouom, Serge Alain Sadeuh-Mba

published 29 May 2024

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Effects of eicosapentaneoic acid on innate immune responses in an Atlantic salmon kidney cell line in vitro

Tor Gjøen, Bente Ruyter, Tone Kari Østbye

published 28 May 2024

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Genome-wide analysis of long noncoding RNAs as cis-acting regulators of transcription factor-encoding genes in IgA nephropathy

Yaling Zhai, Huijuan Tian, Wenhui Zhang, Shuaigang Sun, Zhanzheng Zhao

published 24 May 2024

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Efficient wastewater sample filtration improves the detection of SARS-CoV-2 variants: An extensive analysis based on sequencing parameters

Angelo Robotto, Carlotta Olivero, Elisa Pozzi, Claudia Strumia, Camilla Crasà, Cristina Fedele, Maddalena Derosa, Massimo Di Martino, Stefania Latino, Giada Scorza, Andrea Civra, David Lembo, Paola Quaglino, Enrico Brizio, Denis Polato

published 24 May 2024

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