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Sequencing techniques

Identification of BOLD engine deficiencies and suggestions for improvement based on a curated Tachina (Diptera) record set

Frederik Stein, Oliver Gailing

Modular and cloud-based bioinformatics pipelines for high-confidence biomarker detection in cancer immunotherapy clinical trials

Cu Nguyen, Trinh Nguyen, [ ... ], Daoud Meerzaman

Whole-Genome sequencing of Chikungunya Virus (CHIKV) from Pakistan: Detection of the East/Central/South African (ECSA) genotype during the 2024 outbreak in Mansehra

Massab Umair, Muhammad Yasir, [ ... ], Yusra Javed

Diagnostic accuracy of circulating tumor DNA for detection of ALK rearrangement in lung cancer: A systematic review and meta-analysis of 14 studies

Jiantong Sun, Lan Yang, [ ... ], Lei Li

Transcriptome sequencing reveals the evolutionary histories and gene expression evolution in two related Pagurus species

Zakea Sultana, Isaac Adeyemi Babarinde, [ ... ], Tomoyuki Nakano

Future Sequon Finder - A novel approach for predicting future N-linked glycosylation sequon locations on viral surface proteins

Shane P. Bryan, Martin S. Zand

Passage of human-origin influenza A virus in swine tracheal epithelial cells selects for adaptive mutations in the hemagglutinin gene

Jongsuk Mo, Lucas M. Ferreri, [ ... ], Daniela S. Rajao

Characterization of an unusual carlavirus-like RNA from papaya (Carica papaya) lacking essential genes

Milenka Vera, Raúl Cifuentes, [ ... ], Diego F. Quito-Avila

Bag-of-words is competitive with sum-of-embeddings language-inspired representations on protein inference

Frixos Papadopoulos, Tilman Sanchez-Elsner, Mahesan Niranjan, Ashley I. Heinson

A comparison of DNA methylation detection between HiFi sequencing and whole genome bisulfite sequencing in monozygotic twins with Down syndrome

Kanyanee Promsawan, Chalurmpon Srichomthong, Monnat Pongpanich, Vorasuk Shotelersuk

Stable preservation and recovery of methylation marks from FTA elute cards in species with nucleated red blood cells using a customized DNA extraction method

Livia Gerber, Sarah L. Whiteley, Erin E. Hahn, Clare E. Holleley

cONcat: Computational reconstruction of concatenated fragments from long Oxford Nanopore reads

Alexander J. Petri, Mai Thi-Huyen Nguyen, [ ... ], Kristoffer Sahlin

Identification of podocyte molecular markers in diabetic kidney disease via single-cell RNA sequencing and machine learning

Hailin Li, Quhuan Li, [ ... ], Fengxia Zhang

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