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Sequence motif analysis

Modeling the Quantitative Specificity of DNA-Binding Proteins from Example Binding Sites

Dana S. F. Homsi, Vineet Gupta, Gary D. Stormo

Integrated Expression Profiling and ChIP-seq Analyses of the Growth Inhibition Response Program of the Androgen Receptor

Biaoyang Lin, Jun Wang, [ ... ], Leroy Hood

A Novel Putative miRNA Target Enhancer Signal

Thorsten Schmidt, Hans-Werner Mewes, Volker Stümpflen

Identification of Essential Sequences for Cellular Localization in BRMS1 Metastasis Suppressor

José Rivera, Diego Megías, Carolina Navas, Jerónimo Bravo

A Novel Human Tectonin Protein with Multivalent β-Propeller Folds Interacts with Ficolin and Binds Bacterial LPS

Diana Hooi Ping Low, Zhiwei Ang, [ ... ], Jeak Ling Ding

Targeted Resequencing and Analysis of the Diamond-Blackfan Anemia Disease Locus RPS19

Alvaro Martinez Barrio, Oskar Eriksson, [ ... ], Jens Schuster

Evidence for the Concerted Evolution between Short Linear Protein Motifs and Their Flanking Regions

Claudia Chica, Francesca Diella, Toby J. Gibson

Patterns of Oligonucleotide Sequences in Viral and Host Cell RNA Identify Mediators of the Host Innate Immune System

Benjamin D. Greenbaum, Raul Rabadan, Arnold J. Levine

AllerHunter: A SVM-Pairwise System for Assessment of Allergenicity and Allergic Cross-Reactivity in Proteins

Hon Cheng Muh, Joo Chuan Tong, Martti T. Tammi

Fido, a Novel AMPylation Domain Common to Fic, Doc, and AvrB

Lisa N. Kinch, Melanie L. Yarbrough, Kim Orth, Nick V. Grishin

Evolution of Alternative Splicing Regulation: Changes in Predicted Exonic Splicing Regulators Are Not Associated with Changes in Alternative Splicing Levels in Primates

Manuel Irimia, Jakob Lewin Rukov, Scott William Roy

Gene Classification Based on Amino Acid Motifs and Residues: The DLX (distal-less) Test Case

Nuno A. Fonseca, Cristina P. Vieira, Jorge Vieira

Regulatory Elements within the Prodomain of Falcipain-2, a Cysteine Protease of the Malaria Parasite Plasmodium falciparum

Kailash C. Pandey, David T. Barkan, Andrej Sali, Philip J. Rosenthal

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