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Sequence motif analysis

ENCAP: Computational prediction of tumor T cell antigens with ensemble classifiers and diverse sequence features

Jen-Chieh Yu, Kuan Ni, Ching-Tai Chen

published 18 Jul 2024

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Characterization of BrGH3A, a bovine rumen-derived glycoside hydrolase family 3 β-glucosidase with a permuted domain arrangement

Phiraya Pitchayatanakorn, Eukote Suwan, Prachumporn T. Kongsaeree

published 09 Jul 2024

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Sequence, structure prediction, and epitope analysis of the polymorphic membrane protein family in Chlamydia trachomatis

Patrick W. Cervantes, Brent W. Segelke, Edmond Y. Lau, Beverly V. Robinson, Abisola Abisoye-Ogunniyan, Sukumar Pal, Luis M. de la Maza, Matthew A. Coleman, Patrik D’haeseleer

published 11 Jun 2024

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Molecular regulation of PPARγ/RXRα signaling by the novel cofactor ZFP407

Alyssa Charrier, Jeremiah Ockunzzi, Leighanne Main, Siddharth V. Ghanta, David A. Buchner

published 23 May 2024

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Metagenome mining and functional analysis reveal oxidized guanine DNA repair at the Lost City Hydrothermal Field

Payton H. Utzman, Vincent P. Mays, Briggs C. Miller, Mary C. Fairbanks, William J. Brazelton, Martin P. Horvath

published 08 May 2024

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Structural characterization of two nanobodies targeting the ligand-binding pocket of human Arc

José M. Godoy Muñoz, Lasse Neset, Sigurbjörn Markússon, Sarah Weber, Oda C. Krokengen, Aleksi Sutinen, Eleni Christakou, Andrea J. Lopez, Clive R. Bramham, Petri Kursula

published 29 Apr 2024

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Genome-wide identification and characterization of protein phosphatase 2C (PP2C) gene family in sunflower (Helianthus annuus L.) and their expression profiles in response to multiple abiotic stresses

Nasrin Akter, Md Shohel Ul Islam, Md. Shahedur Rahman, Fatema Tuz Zohra, Shaikh Mizanur Rahman, M. Manirujjaman, Md. Abdur Rauf Sarkar

published 20 Mar 2024

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Candidate target genes of the male-specific expressed Doublesex in the termite Reticulitermes speratus

Kokuto Fujiwara, Satoshi Miyazaki, Kiyoto Maekawa

published 01 Mar 2024

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Transcriptome sequencing and screening of genes related to the MADS-box gene family in Clematis courtoisii

Mingjian Chen, Linfang Li, Shu’an Wang, Peng Wang, Ya Li

published 05 Feb 2024

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Phylogenomic curation of Ovate Family Proteins (OFPs) in the U’s Triangle of Brassica L. indicates stress-induced growth modulation

Muhammad Shahzaib, Uzair Muhammad Khan, Muhammad Tehseen Azhar, Rana Muhammad Atif, Sultan Habibullah Khan, Qamar U. Zaman, Iqrar Ahmad Rana

published 26 Jan 2024

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Machine learning-based approach KEVOLVE efficiently identifies SARS-CoV-2 variant-specific genomic signatures

Dylan Lebatteux, Hugo Soudeyns, Isabelle Boucoiran, Soren Gantt, Abdoulaye Baniré Diallo

published 19 Jan 2024

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The evolutionary loss of the Eh1 motif in FoxE1 in the lineage of placental mammals

Mahak Sharma, Victoria M. Larow, Nataliia Dobychina, Daniel S. Kessler, Maria M. Krasilnikova, Sergey Yaklichkin

published 27 Dec 2023

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In silico analysis of the Seven IN Absentia (SINA) genes in bread wheat sheds light on their structure in plants

Jane Roche, Claire Guérin, Céline Dupuits, Cherkaoui Elmodafar, Pascale Goupil, Said Mouzeyar

published 21 Dec 2023

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