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Sequence motif analysis

Evolution and classification of Ser/Thr phosphatase PP2C family in bacteria: Sequence conservation, structures, domain distribution

Hang Li, Rui Li, Haoyue Yu, Youhuan Zhang, Hong Feng

published 19 May 2025

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Identification of insertion sites for the integrative and conjugative element Tn916 in the Bacillus subtilis chromosome

Emily L. Bean, Janet L. Smith, Alan D. Grossman

published 16 May 2025

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Characterization and identification of extrachromosomal circular DNA in cholangiocarcinoma

Zar Zar Win, Hasaya Dokduang, Siriyakorn Kulwong, Watcharin Loilome, Nisana Namwat, Jutarop Phetcharaburanin, Thidathip Wongsurawat, Piroon Jenjaroenpun, Poramate Klanrit, Arporn Wangwiwatsin

published 05 May 2025

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Epigenetic background of lineage-specific gene expression landscapes of four Staphylococcus aureus hospital isolates

Ilya S. Korotetskiy, Sergey V. Shilov, Tatyana V. Kuznetsova, Natalya Zubenko, Lyudmila Ivanova, Oleg N. Reva

published 05 May 2025

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Coevolution in human small Heat Shock Protein 1 is promoted by interactions between the Alpha-Crystallin domain and the disordered regions

Vanesa Racigh, Luciana Rodriguez Sawicki, Facundo Nicolas Eric Bravo, Maria Silvina Fornasari

published 05 May 2025

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A divide-and-conquer approach based on deep learning for long RNA secondary structure prediction: Focus on pseudoknots identification

Loïc Omnes, Eric Angel, Pierre Bartet, François Radvanyi, Fariza Tahi

published 25 Apr 2025

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Genetic analysis of cis-enhancers associated with bone mineral density and periodontitis in the gene SOST

Avneesh Chopra, Jiahui Song, January Weiner 3rd, Dieter Beule, Arne S. Schaefer

published 24 Mar 2025

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Identification of a potential interspecies reassortant rotavirus G and avastrovirus 2 co-infection from black-headed gull (Chroicocephalus ridibundus) in Hungary

Péter Pankovics, Károly Takáts, Péter Urbán, Róbert Mátics, Gábor Reuter, Ákos Boros

published 24 Mar 2025

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Sequences within and upstream of the mouse Ets1 gene drive high level expression in B cells, but are not sufficient for consistent expression in T cells

Alyssa Kearly, Prontip Saelee, Jonathan Bard, Satrajit Sinha, Anne Satterthwaite, Lee Ann Garrett-Sinha

published 07 Mar 2025

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PCR-based CRISPR/Cas9 system for fluorescent tagging: A tool for studying Candida parapsilosis virulence

Tibor Nemeth, Andrea Zarnocki, Anett Ladanyi, Csaba Papp, Ferhan Ayaydin, Gabor Janos Szebeni, Attila Gacser

published 24 Feb 2025

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NPR1-like genes in Theobroma cacao: Evolutionary insights and potential in enhancing resistance to Phytophthora megakarya

Muhammad Umar Rasheed, Aiman Malik, Muhammad Zeshan Haider, Adnan Sami, Muhammad Shafiq, Qurban Ali, Muhammad Arshad Javed, Ansar Ali

published 14 Feb 2025

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A new method for the reproducible development of aptamers (Neomers)

Cathal Meehan, Erika L. Hamilton, Chloé G. Mansour, Soizic Lecocq, Cole J. Drake, Yisi An, Emily Rodrigues, Gregory Penner

published 12 Feb 2025

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In Silico identification and characterization of SOS gene family in soybean: Potential of calcium in salinity stress mitigation

Anam Hameed, M. Asaf Khan, M. Hammad Nadeem Tahir, Madeeha Shahzad Lodhi, Saima Muzammil, Muhammad Shafiq, Tsanko Gechev, Muhammad Faisal

published 10 Feb 2025

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