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Sequence motif analysis

Analysis and comparison of the bacterial σ⁵⁴ regulon: Evidence of phylogenetic trends in gene regulation

Maricela Carrera-Reyna, Edna Cruz-Flores, Enrique Merino

Positional distribution of transcription factor binding sites in the human genome

Chun-Ping Yu, Zhi Thong Soh, Maloyjo Joyraj Bhattacharjee, Wen-Hsiung Li

The genetic context of bla_IMP varies among bacterial families from One Health sources

Susan Vaughn Grooters, Dixie F. Mollenkopf, Thomas E. Wittum

Short tandem repeat variants are possibly associated with RNA secondary structure and gene expression

Nick Kinney, Dikshya Pathak, Emma Evans, Paola Arias

DeepRice6mA: A convolutional neural network approach for 6mA site prediction in the rice Genome

Hussam Alsharif

Genome-wide identification and characterization of Ethylene-Insensitive 3 (EIN3/EIL) gene family in Camellia oleifera

Shihang Huang, Fang Li, [ ... ], Juan Li

Evolution and classification of Ser/Thr phosphatase PP2C family in bacteria: Sequence conservation, structures, domain distribution

Hang Li, Rui Li, [ ... ], Hong Feng

Identification of insertion sites for the integrative and conjugative element Tn916 in the Bacillus subtilis chromosome

Emily L. Bean, Janet L. Smith, Alan D. Grossman

Characterization and identification of extrachromosomal circular DNA in cholangiocarcinoma

Zar Zar Win, Hasaya Dokduang, [ ... ], Arporn Wangwiwatsin

Epigenetic background of lineage-specific gene expression landscapes of four Staphylococcus aureus hospital isolates

Ilya S. Korotetskiy, Sergey V. Shilov, [ ... ], Oleg N. Reva

Coevolution in human small Heat Shock Protein 1 is promoted by interactions between the Alpha-Crystallin domain and the disordered regions

Vanesa Racigh, Luciana Rodriguez Sawicki, Facundo Nicolas Eric Bravo, Maria Silvina Fornasari

A divide-and-conquer approach based on deep learning for long RNA secondary structure prediction: Focus on pseudoknots identification

Loïc Omnes, Eric Angel, [ ... ], Fariza Tahi

Genetic analysis of cis-enhancers associated with bone mineral density and periodontitis in the gene SOST

Avneesh Chopra, Jiahui Song, [ ... ], Arne S. Schaefer

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