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Sequence motif analysis

Large-scale phylogenomic analysis suggests three ancient superclades of the WUSCHEL-RELATED HOMEOBOX transcription factor family in plants

Cheng-Chiang Wu, Fay-Wei Li, Elena M. Kramer

published 11 Oct 2019

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A combined strategy of neuropeptide prediction and tandem mass spectrometry identifies evolutionarily conserved ancient neuropeptides in the sea anemone Nematostella vectensis

Eisuke Hayakawa, Hiroshi Watanabe, Gerben Menschaert, Thomas W. Holstein, Geert Baggerman, Liliane Schoofs

published 23 Sep 2019

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Genome-wide identification and expression profile analysis of nuclear factor Y family genes in Sorghum bicolor L. (Moench)

P. Maheshwari, Divya Kummari, Sudhakar Reddy Palakolanu, U. Nagasai Tejaswi, M. Nagaraju, G. Rajasheker, G. Jawahar, N. Jalaja, P. Rathnagiri, P. B. Kavi Kishor

published 19 Sep 2019

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DIpartite: A tool for detecting bipartite motifs by considering base interdependencies

Mohammad Vahed, Jun-ichi Ishihara, Hiroki Takahashi

published 30 Aug 2019

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Genome-wide analysis of sulfotransferase genes and their responses to abiotic stresses in Chinese cabbage (Brassica rapa L.)

Lu Jin, Ning Ouyang, Yong Huang, Chunlin Liu, Ying Ruan

published 19 Aug 2019

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A secreted WY-domain-containing protein present in European isolates of the oomycete Plasmopara viticola induces cell death in grapevine and tobacco species

Maud Combier, Edouard Evangelisti, Marie-Christine Piron, David Rengel, Ludovic Legrand, Liron Shenhav, Olivier Bouchez, Sebastian Schornack, Pere Mestre

published 29 Jul 2019

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Hiding in plain sight: New virus genomes discovered via a systematic analysis of fungal public transcriptomes

Kerrigan B. Gilbert, Emily E. Holcomb, Robyn L. Allscheid, James C. Carrington

published 24 Jul 2019

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Identification, expression, alternative splicing and functional analysis of pepper WRKY gene family in response to biotic and abiotic stresses

Jingyuan Zheng, Feng Liu, Chunhui Zhu, Xuefeng Li, Xiongze Dai, Bozhi Yang, Xuexiao Zou, Yanqing Ma

published 22 Jul 2019

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Structure, function and dynamics in acyl carrier proteins

Rohit Farmer, Christopher Morton Thomas, Peter James Winn

published 10 Jul 2019

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Sequencing, genome analysis and prevalence of a cytorhabdovirus discovered in Carica papaya

Andrés X. Medina-Salguero, Juan F. Cornejo-Franco, Samuel Grinstead, Dimitre Mollov, Joseph D. Mowery, Francisco Flores, Diego F. Quito-Avila

published 20 Jun 2019

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Deciphering regulatory DNA sequences and noncoding genetic variants using neural network models of massively parallel reporter assays

Rajiv Movva, Peyton Greenside, Georgi K. Marinov, Surag Nair, Avanti Shrikumar, Anshul Kundaje

published 17 Jun 2019

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RNA structural analysis of the MYC mRNA reveals conserved motifs that affect gene expression

Collin A. O’Leary, Ryan J. Andrews, Van S. Tompkins, Jonathan L. Chen, Jessica L. Childs-Disney, Matthew D. Disney, Walter N. Moss

published 17 Jun 2019

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Identification of inhibitors of an unconventional Trypanosoma brucei kinetochore kinase

Leah S. Torrie, Fabio Zuccotto, David A. Robinson, David W. Gray, Ian H. Gilbert, Manu De Rycker

published 31 May 2019

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