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Sequence motif analysis

Putative Zinc Finger Protein Binding Sites Are Over-Represented in the Boundaries of Methylation-Resistant CpG Islands in the Human Genome

Shicai Fan, Fang Fang, Xuegong Zhang, Michael Q. Zhang

published 21 Nov 2007

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Rapid Changes in Gene Expression Dynamics in Response to Superoxide Reveal SoxRS-Dependent and Independent Transcriptional Networks

Jeffrey L. Blanchard, Wei-Yun Wholey, Erin M. Conlon, Pablo J. Pomposiello

published 14 Nov 2007

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NF-κB/Rel-Mediated Regulation of the Neural Fate in Drosophila

Savita Ayyar, Daniela Pistillo, Manuel Calleja, Anna Brookfield, Kelly Gittins, Claire Goldstone, Pat Simpson

published 14 Nov 2007

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Fine-Tuning Enhancer Models to Predict Transcriptional Targets across Multiple Genomes

Stein Aerts, Jacques van Helden, Olivier Sand, Bassem A. Hassan

published 07 Nov 2007

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Identification and Classification of Hubs in Brain Networks

Olaf Sporns, Christopher J. Honey, Rolf Kötter

published 17 Oct 2007

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Nullomers: Really a Matter of Natural Selection?

Claudia Acquisti, George Poste, David Curtiss, Sudhir Kumar

published 10 Oct 2007

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SLiMFinder: A Probabilistic Method for Identifying Over-Represented, Convergently Evolved, Short Linear Motifs in Proteins

Richard J. Edwards, Norman E. Davey, Denis C. Shields

published 03 Oct 2007

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Structural and Functional Analyses of Five Conserved Positively Charged Residues in the L1 and N-Terminal DNA Binding Motifs of Archaeal RadA Protein

Li-Tzu Chen, Tzu-Ping Ko, Yu-Wei Chang, Kuei-An Lin, Andrew H.-J. Wang, Ting-Fang Wang

published 12 Sep 2007

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Wide-Scale Analysis of Human Functional Transcription Factor Binding Reveals a Strong Bias towards the Transcription Start Site

Yuval Tabach, Ran Brosh, Yossi Buganim, Anat Reiner, Or Zuk, Assif Yitzhaky, Mark Koudritsky, Varda Rotter, Eytan Domany

published 29 Aug 2007

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Selection against Spurious Promoter Motifs Correlates with Translational Efficiency across Bacteria

Jeffrey L. Froula, M. Pilar Francino

published 15 Aug 2007

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Prediction of Cyclin-Dependent Kinase Phosphorylation Substrates

Emmanuel J. Chang, Rashida Begum, Brian T. Chait, Terry Gaasterland

published 01 Aug 2007

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Real-Time Definition of Non-Randomness in the Distribution of Genomic Events

Ulrich Abel, Annette Deichmann, Cynthia Bartholomae, Kerstin Schwarzwaelder, Hanno Glimm, Steven Howe, Adrian Thrasher, Alexandrine Garrigue, Salima Hacein-Bey-Abina, Marina Cavazzana-Calvo, Alain Fischer, Dirk Jaeger, Christof von Kalle, Manfred Schmidt

published 27 Jun 2007

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Blueprint for a High-Performance Biomaterial: Full-Length Spider Dragline Silk Genes

Nadia A. Ayoub, Jessica E. Garb, Robin M. Tinghitella, Matthew A. Collin, Cheryl Y. Hayashi

published 13 Jun 2007

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