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Sequence motif analysis

Functional Diversification of Paralogous Transcription Factors via Divergence in DNA Binding Site Motif and in Expression

Larry N. Singh, Sridhar Hannenhalli

Analysis of the EIAV Rev-Responsive Element (RRE) Reveals a Conserved RNA Motif Required for High Affinity Rev Binding in Both HIV-1 and EIAV

Jae-Hyung Lee, Gloria Culver, Susan Carpenter, Drena Dobbs

Highly Conserved Regimes of Neighbor-Base-Dependent Mutation Generated the Background Primary-Structural Heterogeneities along Vertebrate Chromosomes

Marcos A. Antezana, I. King Jordan

Mechanistic Insights into a Novel Exporter-Importer System of Mycobacterium tuberculosis Unravel Its Role in Trafficking of Iron

Aisha Farhana, Sandeep Kumar, [ ... ], Seyed E. Hasnain

The Nod-Like Receptor (NLR) Family: A Tale of Similarities and Differences

Martina Proell, Stefan J. Riedl, [ ... ], Robert Schwarzenbacher

The T7-Primer Is a Source of Experimental Bias and Introduces Variability between Microarray Platforms

Ron M. Kerkhoven, Daoud Sie, [ ... ], Arno Velds

Probabilistic Inference of Transcription Factor Binding from Multiple Data Sources

Harri Lähdesmäki, Alistair G. Rust, Ilya Shmulevich

Identification of Direct Target Genes Using Joint Sequence and Expression Likelihood with Application to DAF-16

Ron X. Yu, Jie Liu, Nick True, Wei Wang

The Plasmodium Export Element Revisited

Jan Alexander Hiss, Jude Marek Przyborski, [ ... ], Gisbert Schneider

Putative Zinc Finger Protein Binding Sites Are Over-Represented in the Boundaries of Methylation-Resistant CpG Islands in the Human Genome

Shicai Fan, Fang Fang, Xuegong Zhang, Michael Q. Zhang

Rapid Changes in Gene Expression Dynamics in Response to Superoxide Reveal SoxRS-Dependent and Independent Transcriptional Networks

Jeffrey L. Blanchard, Wei-Yun Wholey, Erin M. Conlon, Pablo J. Pomposiello

NF-κB/Rel-Mediated Regulation of the Neural Fate in Drosophila

Savita Ayyar, Daniela Pistillo, [ ... ], Pat Simpson

Fine-Tuning Enhancer Models to Predict Transcriptional Targets across Multiple Genomes

Stein Aerts, Jacques van Helden, Olivier Sand, Bassem A. Hassan

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