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Sequence motif analysis

Genomic Androgen Receptor-Occupied Regions with Different Functions, Defined by Histone Acetylation, Coregulators and Transcriptional Capacity

Li Jia, Benjamin P. Berman, Unnati Jariwala, Xiting Yan, Jon P. Cogan, Allison Walters, Ting Chen, Grant Buchanan, Baruch Frenkel, Gerhard A. Coetzee

published 10 Nov 2008

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A Recoding Method to Improve the Humoral Immune Response to an HIV DNA Vaccine

Yaoxing Huang, Michael Krasnitz, Raul Rabadan, Daniela M. Witten, Yang Song, Arnold J. Levine, David D. Ho, Harlan Robins

published 15 Sep 2008

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Comparative Analysis of mRNA Targets for Human PUF-Family Proteins Suggests Extensive Interaction with the miRNA Regulatory System

Alessia Galgano, Michael Forrer, Lukasz Jaskiewicz, Alexander Kanitz, Mihaela Zavolan, André P. Gerber

published 08 Sep 2008

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Inferring Condition-Specific Modulation of Transcription Factor Activity in Yeast through Regulon-Based Analysis of Genomewide Expression

André Boorsma, Xiang-Jun Lu, Anna Zakrzewska, Frans M. Klis, Harmen J. Bussemaker

published 03 Sep 2008

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Small Deletion Variants Have Stable Breakpoints Commonly Associated with Alu Elements

Adam J. de Smith, Robin G. Walters, Lachlan J. M. Coin, Israel Steinfeld, Zohar Yakhini, Rob Sladek, Philippe Froguel, Alexandra I. F. Blakemore

published 29 Aug 2008

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Longer First Introns Are a General Property of Eukaryotic Gene Structure

Keith R. Bradnam, Ian Korf

published 29 Aug 2008

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A Translation Initiation Element Specific to mRNAs with Very Short 5′UTR that Also Regulates Transcription

Rofa Elfakess, Rivka Dikstein

published 28 Aug 2008

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The Role of bZIP Transcription Factors in Green Plant Evolution: Adaptive Features Emerging from Four Founder Genes

Luiz Gustavo Guedes Corrêa, Diego Mauricio Riaño-Pachón, Carlos Guerra Schrago, Renato Vicentini dos Santos, Bernd Mueller-Roeber, Michel Vincentz

published 13 Aug 2008

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Genome-Wide Survey and Expression Profiling of CCCH-Zinc Finger Family Reveals a Functional Module in Macrophage Activation

Jian Liang, Wenjun Song, Gail Tromp, Pappachan E. Kolattukudy, Mingui Fu

published 06 Aug 2008

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Comparative 3'UTR Analysis Allows Identification of Regulatory Clusters that Drive Eph/ephrin Expression in Cancer Cell Lines

Jennifer Winter, Stefan Roepcke, Sven Krause, Eva-Christina Müller, Albrecht Otto, Martin Vingron, Susann Schweiger

published 23 Jul 2008

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The Actinome of Dictyostelium discoideum in Comparison to Actins and Actin-Related Proteins from Other Organisms

Jayabalan M. Joseph, Petra Fey, Nagendran Ramalingam, Xiao I. Liu, Meino Rohlfs, Angelika A. Noegel, Annette Müller-Taubenberger, Gernot Glöckner, Michael Schleicher

published 09 Jul 2008

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CyclinPred: A SVM-Based Method for Predicting Cyclin Protein Sequences

Mridul K. Kalita, Umesh K. Nandal, Ansuman Pattnaik, Anandhan Sivalingam, Gowthaman Ramasamy, Manish Kumar, Gajendra P. S. Raghava, Dinesh Gupta

published 02 Jul 2008

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Contextual Specificity in Peptide-Mediated Protein Interactions

Amelie Stein, Patrick Aloy

published 02 Jul 2008

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