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Sequence motif analysis

AllerHunter: A SVM-Pairwise System for Assessment of Allergenicity and Allergic Cross-Reactivity in Proteins

Hon Cheng Muh, Joo Chuan Tong, Martti T. Tammi

Fido, a Novel AMPylation Domain Common to Fic, Doc, and AvrB

Lisa N. Kinch, Melanie L. Yarbrough, Kim Orth, Nick V. Grishin

Evolution of Alternative Splicing Regulation: Changes in Predicted Exonic Splicing Regulators Are Not Associated with Changes in Alternative Splicing Levels in Primates

Manuel Irimia, Jakob Lewin Rukov, Scott William Roy

Gene Classification Based on Amino Acid Motifs and Residues: The DLX (distal-less) Test Case

Nuno A. Fonseca, Cristina P. Vieira, Jorge Vieira

Regulatory Elements within the Prodomain of Falcipain-2, a Cysteine Protease of the Malaria Parasite Plasmodium falciparum

Kailash C. Pandey, David T. Barkan, Andrej Sali, Philip J. Rosenthal

Sequence Conservation in Plasmodium falciparum α-Helical Coiled Coil Domains Proposed for Vaccine Development

Caroline Kulangara, Andrey V. Kajava, Giampietro Corradin, Ingrid Felger

An Integrated Approach to Identifying Cis-Regulatory Modules in the Human Genome

Kyoung-Jae Won, Saurabh Agarwal, [ ... ], Wei Wang

smyRNA: A Novel Ab Initio ncRNA Gene Finder

Raheleh Salari, Cagri Aksay, [ ... ], S. Cenk Sahinalp

A Novel Fibronectin Binding Motif in MSCRAMMs Targets F3 Modules

Sabitha Prabhakaran, Xiaowen Liang, [ ... ], Magnus Höök

Fascin-1 Promoter Activity Is Regulated by CREB and the Aryl Hydrocarbon Receptor in Human Carcinoma Cells

Yosuke Hashimoto, David W. Loftis, Josephine C. Adams

HD-PTP Is a Catalytically Inactive Tyrosine Phosphatase Due to a Conserved Divergence in Its Phosphatase Domain

Marie-Claude Gingras, Yu Ling Zhang, [ ... ], Arnim Pause

The Oncogenic EWS-FLI1 Protein Binds In Vivo GGAA Microsatellite Sequences with Potential Transcriptional Activation Function

Noëlle Guillon, Franck Tirode, [ ... ], Olivier Delattre

RBF-TSS: Identification of Transcription Start Site in Human Using Radial Basis Functions Network and Oligonucleotide Positional Frequencies

Rami N. Mahdi, Eric C. Rouchka

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