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Sequence motif analysis

ProteoMapper: Alignment-aware identification and quantitative analysis of contextual motif–domain patterns in protein families

Sifullah Mahmud Sefa, Joyeeta Sarkar, Arif Hasan Khan Robin, Machbah Uddin

published 10 Aug 2026

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Evolutionary patterns of the mitochondrial control region in vertebrates: A large-scale comparative analysis

Mauricio Ochoa Capera, Natalia S. Medina, Paula Montaña-Lozano, Manuela Moreno-Carmona, Antonio Baeza, Carlos Prada-Quiroga

published 10 Jul 2026

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A novel m7G RNA methylation-related signature associated with MAPK signaling pathways in acute ischemic stroke

Wei-Gang Gong, Jian-Wei Lou, Sen Yin, Fang-Pu Yu, Wei Wu

published 23 Jun 2026

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Circ-EnviroPredict: A machine learning-based tool to predict potential involvement of circRNAs with cold and drought stress through a Word2Vec approach

Maria Clara Martins Ferreira, Frederico Schmitt Kremer, Vanessa Galli

published 18 Jun 2026

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ViralMultiNet: A structure-aware multimodal framework for viral protein function prediction in wastewater surveillance

FuGuo Liu, TingLian Lai, WenXia Xu, GuoDong Li

published 03 Jun 2026

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Beyond Clavulanic Acid biosynthesis: Exploring the broad regulatory impact of BldD in Streptomyces clavuligerus ATCC 27064

Luisa F. Patiño, Carlos Caicedo-Montoya, Rigoberto Ríos-Estepa

published 22 Apr 2026

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A cluster of acidic residues in the cytoplasmic domain of SARS-CoV-2 Spike is required for virion-incorporation and infectivity

Charlotte A. Stoneham, Rajendra Singh, Amalia De Leon, Petra Tafelmeyer, Francisco Acosta, Angus Fuori, Michael Anderson, Peter W. Ramirez, Hannah S. Schwartzer-Sperber, Satish Pillai, Mary K. Lewinski, John Guatelli

published 12 Mar 2026

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An upstream secondary DNA motif within the IL3 insulator CTCF binding site is required for enhancer-blocking insulator activity

Sarion R. Bowers, Peter N. Cockerill

published 09 Feb 2026

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Unveiling the molecular mechanisms of burn injury through integrated single-cell and bulk transcriptomic analysis

Xiaoyu Zhu, Neng Huang, Yanyan Pan, Xin Le, Shengyong Cui, Jiliang Li, Youfen Fan

published 27 Jan 2026

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In silico structural and docking models of dipteran FXPRLamide neuropeptides support ligand-receptor coevolution and suggest mechanisms for ligand bias

Sarah M. Farris

published 29 Dec 2025

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AI based comparison of prefrontal cortex activity between piano-majors and non-piano-major musicians during score-based playing and Motif-improvisation

Hyo Jee Kang, Su-cheon Lee, Yoobin Hwang, Jisun Ham, Manbok Park, Kang-moon Park

published 26 Dec 2025

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Epigenome analysis of an algae-infecting giant virus reveals a unique methylation motif catalogue

Alexander R. Truchon, Erik R. Zinser, Steven W. Wilhelm

published 12 Dec 2025

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Unveiling the Plasmodium inositol (pyro)phosphate pathway: Highlighting inositol polyphosphate multikinase as a novel therapeutic target for malaria

Abigail Obuobi, Neils B. Quashie, Nancy Odurowah Duah-Quashie, Jon R. Sayers

published 10 Dec 2025

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