Advertisement

Browse Subject Areas

?

Click through the PLOS taxonomy to find articles in your field.

For more information about PLOS Subject Areas, click here.

Sequence databases

Figures of merit and statistics for detecting faulty species identification with DNA barcodes: A case study in Ramaria and related fungal genera

María P. Martín, Pablo P. Daniëls, David Erickson, John L. Spouge

published 19 Aug 2020

Loading metrics information...

Metrics unavailable. Please check back later.

De novo sequence assembly requires bioinformatic checking of chimeric sequences

Laila Sara Arroyo Mühr, Camilla Lagheden, Sadaf Sakina Hassan, Sara Nordqvist Kleppe, Emilie Hultin, Joakim Dillner

published 10 Aug 2020

Loading metrics information...

Metrics unavailable. Please check back later.

Evidence for contamination as the origin for bacteria found in human placenta rather than a microbiota

Rémi Gschwind, Thierry Fournier, Sean Kennedy, Vassilis Tsatsaris, Anne-Gaël Cordier, Frédéric Barbut, Marie-José Butel, Sandra Wydau-Dematteis

published 10 Aug 2020

Loading metrics information...

Metrics unavailable. Please check back later.

The utility of DNA barcodes to confirm the identification of palm collections in botanical gardens

Duc-Thanh Le, Yu-Qu Zhang, Yong Xu, Li-Xiu Guo, Zhi-Ping Ruan, Kevin S. Burgess, Xue-Jun Ge

published 31 Jul 2020

Loading metrics information...

Metrics unavailable. Please check back later.

Classification of 16S rRNA reads is improved using a niche-specific database constructed by near-full length sequencing

Phillip R. Myer, Tara G. McDaneld, Larry A. Kuehn, Keith D. Dedonder, Michael D. Apley, Sarah F. Capik, Brian V. Lubbers, Gregory P. Harhay, Dayna M. Harhay, John W. Keele, Madison T. Henniger, Brooke A. Clemmons, Timothy P. L. Smith

published 13 Jul 2020

Loading metrics information...

Metrics unavailable. Please check back later.

Evaluation of variant calling for cpn60 barcode sequence-based microbiome profiling

Sarah J. Vancuren, Scott J. Dos Santos, Janet E. Hill, the Maternal Microbiome Legacy Project Team

published 09 Jul 2020

Loading metrics information...

Metrics unavailable. Please check back later.

Sharpening the DNA barcoding tool through a posteriori taxonomic validation: The case of Longitarsus flea beetles (Coleoptera: Chrysomelidae)

Daniele Salvi, Emanuele Berrilli, Paola D’Alessandro, Maurizio Biondi

published 21 May 2020

Loading metrics information...

Metrics unavailable. Please check back later.

Multifaceted analysis of training and testing convolutional neural networks for protein secondary structure prediction

Maxim Shapovalov, Roland L. Dunbrack Jr., Slobodan Vucetic

published 06 May 2020

Loading metrics information...

Metrics unavailable. Please check back later.

Genetic variability of human adenovirus type 7 circulating in mainland China

Ru Cai, Naiying Mao, Jingjing Dai, Xingyu Xiang, Jing Xu, Yingwei Ma, Zhong Li, Guangyue Han, Deshan Yu, Jie Yin, Aili Cui, Yan Zhang, Hong Li, Pengbo Yu, Luyuan Guan, Yuling Tian, Liwei Sun, Yan Li, Yamei Wei, Zhen Zhu, Wenbo Xu

published 30 Apr 2020

Loading metrics information...

Metrics unavailable. Please check back later.

OdoBD: An online database for the dragonflies and damselflies of Bangladesh

Md Nur Ahad Shah, Md Kawsar Khan

published 23 Apr 2020

Loading metrics information...

Metrics unavailable. Please check back later.

Study of susceptibility to antibiotics and molecular characterization of high virulence Staphylococcus aureus strains isolated from a rural hospital in Ethiopia

Cristina Verdú-Expósito, Juan Romanyk, Juan Cuadros-González, Abraham TesfaMariam, José Luis Copa-Patiño, Jorge Pérez-Serrano, Juan Soliveri

published 12 Mar 2020

Loading metrics information...

Metrics unavailable. Please check back later.

Microbial resolution of whole genome shotgun and 16S amplicon metagenomic sequencing using publicly available NEON data

Kyle D. Brumfield, Anwar Huq, Rita R. Colwell, James L. Olds, Menu B. Leddy

published 13 Feb 2020

Loading metrics information...

Metrics unavailable. Please check back later.

Deep-sea amphipods around cobalt-rich ferromanganese crusts: Taxonomic diversity and selection of candidate species for connectivity analysis

Akira Iguchi, Miyuki Nishijima, Yuki Yoshioka, Aika Miyagi, Ryuichi Miwa, Yuichiro Tanaka, Shogo Kato, Takaaki Matsui, Yoshiaki Igarashi, Nobuyuki Okamoto, Atsushi Suzuki

published 06 Feb 2020

Loading metrics information...

Metrics unavailable. Please check back later.

Advertisement

Create a weekly email alert for: Sequence databases

You can change these options by clicking profile then "Alerts and Notifications"