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Sequence databases

Combining dense and sparse labeling in optical DNA mapping

Erik Torstensson, Gaurav Goyal, Anna Johnning, Fredrik Westerlund, Tobias Ambjörnsson

published 29 Nov 2021

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Single nucleotide polymorphisms and copy-number variations in the Trypanosoma brucei repeat (TBR) sequence can be used to enhance amplification and genotyping of Trypanozoon strains

Nick Van Reet, Pati Patient Pyana, Sara Dehou, Nicolas Bebronne, Stijn Deborggraeve, Philippe Büscher

published 25 Oct 2021

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Verification of Thai ethnobotanical medicine “Kamlang Suea Khrong” driven by multiplex PCR and powerful TLC techniques

Suthira Yanaso, Ampai Phrutivorapongkul, Darunee Hongwiset, Sirivipa Piyamongkol, Aekkhaluck Intharuksa

published 17 Sep 2021

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De novo transcriptome analysis and identification of reproduction control genes from the red palm weevil Rhynchophorus ferrugineus

Khawaja Ghulam Rasool, Khalid Mehmood, Mureed Husain, Muhammad Tufail, Waleed Saleh Alwaneen, Abdulrahman Saad Aldawood

published 24 May 2021

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iBLAST: Incremental BLAST of new sequences via automated e-value correction

Sajal Dash, Sarthok Rasique Rahman, Heather M. Hines, Wu-chun Feng

published 22 Apr 2021

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From e-voucher to genomic data: Preserving archive specimens as demonstrated with medically important mosquitoes (Diptera: Culicidae) and kissing bugs (Hemiptera: Reduviidae)

Silvia Andrade Justi, John Soghigian, David B. Pecor, Laura Caicedo-Quiroga, Wiriya Rutvisuttinunt, Tao Li, Lori Stevens, Patricia L. Dorn, Brian Wiegmann, Yvonne-Marie Linton

published 25 Feb 2021

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Genome-wide identification and expression analysis of the NCED family in cotton (Gossypium hirsutum L.)

QingHua Li, XianTao Yu, Long Chen, Gang Zhao, ShiZhou Li, Hao Zhou, Yu Dai, Na Sun, YongFei Xie, JunShan Gao, DaHui Li, Xu Sun, Ning Guo

published 25 Feb 2021

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Could LASCA-imaging of GB-speckles be applied for a high discrimination and typing of pathogenic bacteria?

Onega Ulianova, Sergey Ulyanov, Sergey Zaytsev, Yuriy Saltykov, Alexander Ulyanov, Valentina Feodorova

published 28 Jan 2021

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SeqRepo: A system for managing local collections of biological sequences

Reece K. Hart, Andreas Prlić

published 03 Dec 2020

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Single-molecule real-time sequencing of the full-length transcriptome of loquat under low-temperature stress

Cuiping Pan, Yongqing Wang, Lian Tao, Hui Zhang, Qunxian Deng, Zhiwu Yang, Zhuoheng Chi, Yunmiao Yang

published 11 Sep 2020

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Figures of merit and statistics for detecting faulty species identification with DNA barcodes: A case study in Ramaria and related fungal genera

María P. Martín, Pablo P. Daniëls, David Erickson, John L. Spouge

published 19 Aug 2020

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De novo sequence assembly requires bioinformatic checking of chimeric sequences

Laila Sara Arroyo Mühr, Camilla Lagheden, Sadaf Sakina Hassan, Sara Nordqvist Kleppe, Emilie Hultin, Joakim Dillner

published 10 Aug 2020

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Evidence for contamination as the origin for bacteria found in human placenta rather than a microbiota

Rémi Gschwind, Thierry Fournier, Sean Kennedy, Vassilis Tsatsaris, Anne-Gaël Cordier, Frédéric Barbut, Marie-José Butel, Sandra Wydau-Dematteis

published 10 Aug 2020

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