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Sequence databases

Bioinformatics for Dentistry: A secondary database for the genetics of tooth development

Ava K. Chow, Rachel Low, Jerald Yuan, Karen K. Yee, Jaskaranjit Kaur Dhaliwal, Shanice Govia, Nazlee Sharmin

published 06 Jun 2024

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Identifying widespread and recurrent variants of genetic parts to improve annotation of engineered DNA sequences

Matthew J. McGuffie, Jeffrey E. Barrick

published 28 May 2024

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A unified classification system for HIV-1 5’ long terminal repeats

Xing Guo, Dan Yu, Mengying Liu, Hanping Li, Mingyue Chen, Xinyu Wang, Xiuli Zhai, Bohan Zhang, Yanglan Wang, Caiqing Yang, Chunlei Wang, Yongjian Liu, Jingwan Han, Xiaolin Wang, Jingyun Li, Lei Jia, Lin Li

published 02 May 2024

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Validation of deep amplicon sequencing of Dicrocoelium in small ruminants from Northern regions of Pakistan

Muhammad Asim Khan, Kiran Afshan, Sabika Firasat, Muhammad Abbas, Neil D. Sargison, Martha Betson, Umer Chaudhry

published 29 Apr 2024

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Geographical distribution of mobile genetic elements in microbial communities along the Yucatan coast

Francisco Guillén-Chable, Johnny Omar Valdez Iuit, Luis Alejandro Avila Castro, Carlos Rosas, Enrique Merino, Zuemy Rodríguez-Escamilla, Mario Alberto Martínez-Núñez

published 29 Apr 2024

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Bioinformatics pipeline for the systematic mining genomic and proteomic variation linked to rare diseases: The example of monogenic diabetes

Ksenia G. Kuznetsova, Jakub Vašíček, Dafni Skiadopoulou, Janne Molnes, Miriam Udler, Stefan Johansson, Pål Rasmus Njølstad, Alisa Manning, Marc Vaudel

published 18 Apr 2024

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A fast comparative genome browser for diverse bacteria and archaea

Morgan N. Price, Adam P. Arkin

published 09 Apr 2024

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In silico assessment of 18S rDNA metabarcoding markers for the characterization of nematode communities

Gentile Francesco Ficetola, Alessia Guerrieri, Isabel Cantera, Aurelie Bonin

published 05 Apr 2024

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Comparing modern identification methods for wild bees: Metabarcoding and image-based morphological taxonomic assignment

Cassandra D. Smith, Robert S. Cornman, Jennifer A. Fike, Johanna M. Kraus, Sara J. Oyler-McCance, Carrie E. Givens, Michelle L. Hladik, Mark W. Vandever, Dana W. Kolpin, Kelly L. Smalling

published 02 Apr 2024

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Effect of target gene sequence evenness and dominance on real-time PCR quantification of artificial sulfate-reducing microbial communities

Zhe Du, Sebastian F. Behrens

published 07 Mar 2024

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Molecular characterization of mitochondrial COI gene sequences in Micraspis allardi from Pakistan

Rida Asrar, Mariyam Masood, Imran Bodlah, Ghulam Rasool, Nazia Suleman, Sumaira Yousaf

published 27 Dec 2023

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A taxonomic schema of potential pitfalls in clinical variant analysis based on real-world evidence

Adam Coovadia, Luigi Boccuto, Yenui Chang, Jane DeLuca

published 30 Nov 2023

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MORA and EnsembleTFpredictor: An ensemble approach to reveal functional transcription factor regulatory networks

Kevin Boyer, Louis Li, Tiandao Li, Bo Zhang, Guoyan Zhao

published 30 Nov 2023

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