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Sequence databases

Structural and Functional Insights from the Metagenome of an Acidic Hot Spring Microbial Planktonic Community in the Colombian Andes

Diego Javier Jiménez, Fernando Dini Andreote, Diego Chaves, José Salvador Montaña, Cesar Osorio-Forero, Howard Junca, María Mercedes Zambrano, Sandra Baena

published 14 Dec 2012

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A Simple 2D Non-Parametric Resampling Statistical Approach to Assess Confidence in Species Identification in DNA Barcoding—An Alternative to Likelihood and Bayesian Approaches

Qian Jin, Li-Jun He, Ai-Bing Zhang

published 11 Dec 2012

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DNA Barcoding Reveals Cryptic Diversity within Commercially Exploited Indo-Malay Carangidae (Teleosteii: Perciformes)

Tun Nurul Aimi Mat Jaafar, Martin I. Taylor, Siti Azizah Mohd Nor, Mark de Bruyn, Gary R. Carvalho

published 29 Nov 2012

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De-MetaST-BLAST: A Tool for the Validation of Degenerate Primer Sets and Data Mining of Publicly Available Metagenomes

Christopher A. Gulvik, T. Chad Effler, Steven W. Wilhelm, Alison Buchan

published 26 Nov 2012

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OTU Analysis Using Metagenomic Shotgun Sequencing Data

Xiaolin Hao, Ting Chen

published 26 Nov 2012

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Identification and Re-Evaluation of Freshwater Catfishes through DNA Barcoding

Maloyjo J. Bhattacharjee, Boni A. Laskar, Bishal Dhar, Sankar K. Ghosh

published 15 Nov 2012

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Utility of the trnH–psbA Intergenic Spacer Region and Its Combinations as Plant DNA Barcodes: A Meta-Analysis

Xiaohui Pang, Chang Liu, Linchun Shi, Rui Liu, Dong Liang, Huan Li, Stacey S. Cherny, Shilin Chen

published 14 Nov 2012

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MOCAT: A Metagenomics Assembly and Gene Prediction Toolkit

Jens Roat Kultima, Shinichi Sunagawa, Junhua Li, Weineng Chen, Hua Chen, Daniel R. Mende, Manimozhiyan Arumugam, Qi Pan, Binghang Liu, Junjie Qin, Jun Wang, Peer Bork

published 17 Oct 2012

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De Novo Foliar Transcriptome of Chenopodium amaranticolor and Analysis of Its Gene Expression During Virus-Induced Hypersensitive Response

Yongqiang Zhang, Xinwu Pei, Chao Zhang, Zifeng Lu, Zhixing Wang, Shirong Jia, Weimin Li

published 28 Sep 2012

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PCR Primers for Metazoan Nuclear 18S and 28S Ribosomal DNA Sequences

Ryuji J. Machida, Nancy Knowlton

published 25 Sep 2012

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PHYMYCO-DB: A Curated Database for Analyses of Fungal Diversity and Evolution

Stéphane Mahé, Marie Duhamel, Thomas Le Calvez, Laetitia Guillot, Ludmila Sarbu, Anthony Bretaudeau, Olivier Collin, Alexis Dufresne, E. Toby Kiers, Philippe Vandenkoornhuyse

published 13 Sep 2012

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A Public HTLV-1 Molecular Epidemiology Database for Sequence Management and Data Mining

Thessika Hialla Almeida Araujo, Leandro Inacio Souza-Brito, Pieter Libin, Koen Deforche, Dustin Edwards, Antonio Eduardo de Albuquerque-Junior, Anne-Mieke Vandamme, Bernardo Galvao-Castro, Luiz Carlos Junior Alcantara

published 10 Sep 2012

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Reverse Taxonomy for Elucidating Diversity of Insect-Associated Nematodes: A Case Study with Termites

Natsumi Kanzaki, Robin M. Giblin-Davis, Rudolf H. Scheffrahn, Hisatomo Taki, Alejandro Esquivel, Kerrie A. Davies, E. Allen Herre

published 28 Aug 2012

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