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Sequence databases

Resampling Nucleotide Sequences with Closest-Neighbor Trimming and Its Comparison to Other Methods

Kouki Yonezawa, Manabu Igarashi, Keisuke Ueno, Ayato Takada, Kimihito Ito

published 27 Feb 2013

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Improved Detection of Remote Homologues Using Cascade PSI-BLAST: Influence of Neighbouring Protein Families on Sequence Coverage

Swati Kaushik, Eshita Mutt, Ajithavalli Chellappan, Sandhya Sankaran, Narayanaswamy Srinivasan, Ramanathan Sowdhamini

published 20 Feb 2013

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A Composite Method Based on Formal Grammar and DNA Structural Features in Detecting Human Polymerase II Promoter Region

Sutapa Datta, Subhasis Mukhopadhyay

published 20 Feb 2013

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MALDI-TOF MS Distinctly Differentiates Nontypable Haemophilus influenzae from Haemophilus haemolyticus

Bingqing Zhu, Di Xiao, Huifang Zhang, Yongchan Zhang, Yuan Gao, Li Xu, Jing Lv, Yingtong Wang, Jianzhong Zhang, Zhujun Shao

published 14 Feb 2013

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Transcriptome Profiling of the Goose (Anser cygnoides) Ovaries Identify Laying and Broodiness Phenotypes

Qi Xu, WenMing Zhao, Yang Chen, YiYu Tong, GuangHui Rong, ZhengYang Huang, Yang Zhang, GuoBing Chang, XinSheng Wu, GuoHong Chen

published 06 Feb 2013

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Discovery of Glycoside Hydrolase Enzymes in an Avicel-Adapted Forest Soil Fungal Community by a Metatranscriptomic Approach

Kazuto Takasaki, Takamasa Miura, Manabu Kanno, Hideyuki Tamaki, Satoshi Hanada, Yoichi Kamagata, Nobutada Kimura

published 05 Feb 2013

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Evaluating the Accuracy of Morphological Identification of Larval Fishes by Applying DNA Barcoding

Hui-Ling Ko, Yu-Tze Wang, Tai-Sheng Chiu, Ming-An Lee, Ming-Yih Leu, Kuang-Zong Chang, Wen-Yu Chen, Kwang-Tsao Shao

published 31 Jan 2013

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Sequencing and De Novo Assembly of the Western Tarnished Plant Bug (Lygus hesperus) Transcriptome

J. Joe Hull, Scott M. Geib, Jeffrey A. Fabrick, Colin S. Brent

published 24 Jan 2013

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Unveiling Distribution Patterns of Freshwater Phytoplankton by a Next Generation Sequencing Based Approach

Alexander Eiler, Stina Drakare, Stefan Bertilsson, Jakob Pernthaler, Sari Peura, Carina Rofner, Karel Simek, Yang Yang, Petr Znachor, Eva S. Lindström

published 22 Jan 2013

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Description of the L76V Resistance Protease Mutation in HIV-1 B and “Non-B” Subtypes

Charlotte Charpentier, Sidonie Lambert-Niclot, Claudia Alteri, Alexandre Storto, Philippe Flandre, Valentina Svicher, Carlo-Federico Perno, Françoise Brun-Vézinet, Vincent Calvez, Anne-Geneviève Marcelin, Francesca Ceccherini-Silberstein, Diane Descamps

published 18 Jan 2013

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The Species Dilemma of Northeast Indian Mahseer (Actinopterygii: Cyprinidae): DNA Barcoding in Clarifying the Riddle

Boni A. Laskar, Maloyjo J. Bhattacharjee, Bishal Dhar, Pradosh Mahadani, Shantanu Kundu, Sankar K. Ghosh

published 16 Jan 2013

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Taxonomic Classification of Bacterial 16S rRNA Genes Using Short Sequencing Reads: Evaluation of Effective Study Designs

Orna Mizrahi-Man, Emily R. Davenport, Yoav Gilad

published 07 Jan 2013

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DNA Barcoding for Identification of ‘Candidatus Phytoplasmas’ Using a Fragment of the Elongation Factor Tu Gene

Olga Makarova, Nicoletta Contaldo, Samanta Paltrinieri, Geofrey Kawube, Assunta Bertaccini, Mogens Nicolaisen

published 18 Dec 2012

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