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Sequence databases

The Human Gut Chip “HuGChip”, an Explorative Phylogenetic Microarray for Determining Gut Microbiome Diversity at Family Level

William Tottey, Jeremie Denonfoux, Faouzi Jaziri, Nicolas Parisot, Mohiedine Missaoui, David Hill, Guillaume Borrel, Eric Peyretaillade, Monique Alric, Hugh M. B. Harris, Ian B. Jeffery, Marcus J. Claesson, Paul W. O'Toole, Pierre Peyret, Jean-François Brugère

published 17 May 2013

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Protein Clustering and RNA Phylogenetic Reconstruction of the Influenza a Virus NS1 Protein Allow an Update in Classification and Identification of Motif Conservation

Edgar E. Sevilla-Reyes, David A. Chavaro-Pérez, Elvira Piten-Isidro, Luis H. Gutiérrez-González, Teresa Santos-Mendoza

published 07 May 2013

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No Ancient DNA Damage in Actinobacteria from the Neanderthal Bone

Katarzyna Zaremba-Niedźwiedzka, Siv G. E. Andersson

published 03 May 2013

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Equivalent Indels – Ambiguous Functional Classes and Redundancy in Databases

Jens Assmus, Jürgen Kleffe, Armin O. Schmitt, Gudrun A. Brockmann

published 02 May 2013

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CLUSTOM: A Novel Method for Clustering 16S rRNA Next Generation Sequences by Overlap Minimization

Kyuin Hwang, Jeongsu Oh, Tae-Kyung Kim, Byung Kwon Kim, Dong Su Yu, Bo Kyeng Hou, Gustavo Caetano-Anollés, Soon Gyu Hong, Kyung Mo Kim

published 01 May 2013

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Filling Gaps in Biodiversity Knowledge for Macrofungi: Contributions and Assessment of an Herbarium Collection DNA Barcode Sequencing Project

Todd W. Osmundson, Vincent A. Robert, Conrad L. Schoch, Lydia J. Baker, Amy Smith, Giovanni Robich, Luca Mizzan, Matteo M. Garbelotto

published 30 Apr 2013

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MabsBase: A Mycobacterium abscessus Genome and Annotation Database

Hamed Heydari, Wei Yee Wee, Naline Lokanathan, Ranjeev Hari, Aini Mohamed Yusoff, Ching Yew Beh, Amir Hessam Yazdi, Guat Jah Wong, Yun Fong Ngeow, Siew Woh Choo

published 29 Apr 2013

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Characterization of Novel Precursor miRNAs Using Next Generation Sequencing and Prediction of miRNA Targets in Atlantic Halibut

Teshome Tilahun Bizuayehu, Jorge M. O. Fernandes, Steinar D. Johansen, Igor Babiak

published 23 Apr 2013

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Species Identification and Profiling of Complex Microbial Communities Using Shotgun Illumina Sequencing of 16S rRNA Amplicon Sequences

Swee Hoe Ong, Vinutha Uppoor Kukkillaya, Andreas Wilm, Christophe Lay, Eliza Xin Pei Ho, Louie Low, Martin Lloyd Hibberd, Niranjan Nagarajan

published 08 Apr 2013

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How Effective Are DNA Barcodes in the Identification of African Rainforest Trees?

Ingrid Parmentier, Jérôme Duminil, Maria Kuzmina, Morgane Philippe, Duncan W. Thomas, David Kenfack, George B. Chuyong, Corinne Cruaud, Olivier J. Hardy

published 02 Apr 2013

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Unveiling the Diet of Elusive Rainforest Herbivores in Next Generation Sequencing Era? The Tapir as a Case Study

Fabrice Hibert, Pierre Taberlet, Jérôme Chave, Caroline Scotti-Saintagne, Daniel Sabatier, Cécile Richard-Hansen

published 01 Apr 2013

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Construction of Customized Sub-Databases from NCBI-nr Database for Rapid Annotation of Huge Metagenomic Datasets Using a Combined BLAST and MEGAN Approach

Ke Yu, Tong Zhang

published 01 Apr 2013

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RNA-Seq Analysis of Cocos nucifera: Transcriptome Sequencing and De Novo Assembly for Subsequent Functional Genomics Approaches

Haikuo Fan, Yong Xiao, Yaodong Yang, Wei Xia, Annaliese S. Mason, Zhihui Xia, Fei Qiao, Songlin Zhao, Haoru Tang

published 29 Mar 2013

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