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Sequence databases

DNA Barcoding Reveals Limited Accuracy of Identifications Based on Folk Taxonomy

Hugo J. de Boer, Abderrahim Ouarghidi, Gary Martin, Abdelaziz Abbad, Anneleen Kool

published 08 Jan 2014

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ClassyFlu: Classification of Influenza A Viruses with Discriminatively Trained Profile-HMMs

Sandra Van der Auwera, Ingo Bulla, Mario Ziller, Anne Pohlmann, Timm Harder, Mario Stanke

published 03 Jan 2014

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Deep Sequencing-Based Analysis of the Cymbidium ensifolium Floral Transcriptome

Xiaobai Li, Jie Luo, Tianlian Yan, Lin Xiang, Feng Jin, Dehui Qin, Chongbo Sun, Ming Xie

published 31 Dec 2013

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Low-Bandwidth and Non-Compute Intensive Remote Identification of Microbes from Raw Sequencing Reads

Laurent Gautier, Ole Lund

published 31 Dec 2013

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Ion Torrent PGM as Tool for Fungal Community Analysis: A Case Study of Endophytes in Eucalyptus grandis Reveals High Taxonomic Diversity

Martin Kemler, Jeff Garnas, Michael J. Wingfield, Marieka Gryzenhout, Kerry-Anne Pillay, Bernard Slippers

published 16 Dec 2013

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Next Generation Sequencing of Fecal DNA Reveals the Dietary Diversity of the Widespread Insectivorous Predator Daubenton’s Bat (Myotis daubentonii) in Southwestern Finland

Eero J. Vesterinen, Thomas Lilley, Veronika N. Laine, Niklas Wahlberg

published 27 Nov 2013

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Floral Transcriptome Sequencing for SSR Marker Development and Linkage Map Construction in the Tea Plant (Camellia sinensis)

Li-Qiang Tan, Li-Yuan Wang, Kang Wei, Cheng-Cai Zhang, Li-Yun Wu, Gui-Nian Qi, Hao Cheng, Qiang Zhang, Qing-Mei Cui, Jin-Bo Liang

published 26 Nov 2013

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Discovery of Genes Related to Witches Broom Disease in Paulownia tomentosa × Paulownia fortunei by a De Novo Assembled Transcriptome

Rongning Liu, Yanpeng Dong, Guoqiang Fan, Zhenli Zhao, Minjie Deng, Xibing Cao, Suyan Niu

published 21 Nov 2013

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Next Generation Sequencing Reveals the Hidden Diversity of Zooplankton Assemblages

Penelope K. Lindeque, Helen E. Parry, Rachel A. Harmer, Paul J. Somerfield, Angus Atkinson

published 07 Nov 2013

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Two New Computational Methods for Universal DNA Barcoding: A Benchmark Using Barcode Sequences of Bacteria, Archaea, Animals, Fungi, and Land Plants

Akifumi S. Tanabe, Hirokazu Toju

published 18 Oct 2013

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Sequencing and De Novo Analysis of the Hemocytes Transcriptome in Litopenaeus vannamei Response to White Spot Syndrome Virus Infection

Shuxia Xue, Yichen Liu, Yichen Zhang, Yan Sun, Xuyun Geng, Jinsheng Sun

published 18 Oct 2013

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Taxonomic Precision of Different Hypervariable Regions of 16S rRNA Gene and Annotation Methods for Functional Bacterial Groups in Biological Wastewater Treatment

Feng Guo, Feng Ju, Lin Cai, Tong Zhang

published 16 Oct 2013

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Characterization of Liaoning Cashmere Goat Transcriptome: Sequencing, De Novo Assembly, Functional Annotation and Comparative Analysis

Hongliang Liu, Tingting Wang, Jinke Wang, Fusheng Quan, Yong Zhang

published 09 Oct 2013

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