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Sequence analysis

Epigenome analysis of an algae-infecting giant virus reveals a unique methylation motif catalogue

Alexander R. Truchon, Erik R. Zinser, Steven W. Wilhelm

published 12 Dec 2025

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Unveiling the Plasmodium inositol (pyro)phosphate pathway: Highlighting inositol polyphosphate multikinase as a novel therapeutic target for malaria

Abigail Obuobi, Neils B. Quashie, Nancy Odurowah Duah-Quashie, Jon R. Sayers

published 10 Dec 2025

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Inflammatory cytokines promote interferon regulatory factor (IRF) transcriptional activity in human pulmonary epithelial cells through the induction of IRF1 by nuclear factor-κB

Amandah Necker-Brown, Mahmoud M. Mostafa, Andrei Georgescu, Andrew J. Thorne, Priyanka Chandramohan, Cora Kooi, Keerthana Kalyanaraman, Alex Gao, Akanksha Bansal, Sarah K. Sasse, Anthony N. Gerber, Richard Leigh, Robert Newton

published 08 Dec 2025

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Beyond accuracy: Quantifying the reliability of multiple instance learning for whole slide image classification

Hassan Keshvarikhojasteh, Marc Aubreville, Christof A. Bertram, Josien P. W. Pluim, Mitko Veta

published 05 Dec 2025

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Updated resource of 180K soybean SNP genotyping array based on the T2T reference genome

Ji-Hun Hwang, Sungwoo Lee, Ju Seok Lee, Kyung Do Kim

published 05 Dec 2025

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Multi-locus phylogenetic network analysis of Ampelomyces mycoparasites isolated from diverse powdery mildews in Australia and the generation of two de novo genome assemblies

Lauren Goldspink, Alexandros G. Sotiropoulos, Alexander Idnurm, Gavin J. Ash, John D. W. Dearnaley, Morwenna Boddington, Aftab Ahmad, Márk Z. Németh, Alexandra Pintye, Markus Gorfer, Hyeon-Dong Shin, Gábor M. Kovács, Niloofar Vaghefi, Levente Kiss

published 04 Dec 2025

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Moringa oleifera potential for the treatment and prevention of COVID-19 involving molecular interaction, antioxidant properties and kinetic mechanism

Mamoudou Hamadou, Christian Bernard Bakwo Bassogog, Fookalbo Vagai Obadias, Abras Djaffi Assaly, Martin Alain Mune Mune

published 03 Dec 2025

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Demographic history and population structure of Phlebotomus argentipes (Diptera: Psychodidae) complex, the leishmaniasis vector in Sri Lanka

W. M. M. Wedage, Iresha N. Harischandra, O. V. D. S. J. Weerasena, S. A. S. C. Senanayake, B. G. D. N. K. De Silva

published 02 Dec 2025

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Megabarcoding dark taxa – Assessing the utility of mass DNA barcoding for phorid fly species discovery

Jiri Vihavainen, Niina Kiljunen, Pekka Pohjola, Jaclyn McKeown, Eveliina Oinonen, Marko Mutanen, Jaakko Pohjoismäki

published 02 Dec 2025

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eDNA reveals spatial differences in species composition of protected rockfishes

Stephanie A. Matthews, Olivia M. Scott, Meredith V. Everett, Megan R. Shaffer, Elizabeth Andruszkiewicz Allan, Andrew O. Shelton, Gregory D. Williams, Abigail Wells, Krista M. Nichols, Ryan P. Kelly

published 01 Dec 2025

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DOGMA: de novo assembly of densely labelled optical DNA maps using a matrix profile approach

Albertas Dvirnas, Luis Mario Leal-Garza, Zahra Abbaspour, Erik Fröbrant, Karolin Frykholm, Marie Wrande, Linus Sandegren, Fredrik Westerlund, Tobias Ambjörnsson

published 01 Dec 2025

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Generational mutation patterns in a honey bee Deformed wing virus via infectious clones

Anthony Nearman, Alriana Buller-Jarrett, Dawn Boncristiani, Eugene Ryabov, Yanping Chen, Jay D. Evans

published 19 Nov 2025

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Towards personalized recommendation with enhancing preference matching through scene-weighted reranking

Kun Tong, GuoXin Tan

published 18 Nov 2025

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