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Sequence analysis

Strengths and Limitations of 16S rRNA Gene Amplicon Sequencing in Revealing Temporal Microbial Community Dynamics

Rachel Poretsky, Luis M. Rodriguez-R, [ ... ], Konstantinos T. Konstantinidis

A Model-Based Approach to Identify Binding Sites in CLIP-Seq Data

Tao Wang, Beibei Chen, [ ... ], Guanghua Xiao

Tools for Gene-Regulatory Analyses in the Marine Annelid Platynereis dumerilii

Benjamin Backfisch, Vitaly V. Kozin, [ ... ], Florian Raible

MC64-ClustalWP2: A Highly-Parallel Hybrid Strategy to Align Multiple Sequences in Many-Core Architectures

David Díaz, Francisco J. Esteban, [ ... ], Sergio Gálvez

Estimated Secondary Structure Propensities within V1/V2 Region of HIV gp120 Are an Important Global Antibody Neutralization Sensitivity Determinant

Maxim Totrov

A Framework Phylogeny of the American Oak Clade Based on Sequenced RAD Data

Andrew L. Hipp, Deren A. R. Eaton, [ ... ], Paul S. Manos

Identification of Novel Regulatory Small RNAs in Acinetobacter baumannii

Rajnikant Sharma, Sankalp Arya, [ ... ], Ranjana Pathania

Parallel Clustering Algorithm for Large-Scale Biological Data Sets

Minchao Wang, Wu Zhang, [ ... ], Jiang Xie

Deep Sequencing to Identify the Causes of Viral Encephalitis

Benjamin K. Chan, Theodore Wilson, Kael F. Fischer, John D. Kriesel

Genetic Variability of Plasmodium malariae dihydropteroate synthase (dhps) in Four Asian Countries

Naowarat Tanomsing, Mayfong Mayxay, [ ... ], Mallika Imwong

Evolutionary Origins of C-Terminal (GPP)n 3-Hydroxyproline Formation in Vertebrate Tendon Collagen

David M. Hudson, Rachel Werther, [ ... ], David R. Eyre

Full Genome Virus Detection in Fecal Samples Using Sensitive Nucleic Acid Preparation, Deep Sequencing, and a Novel Iterative Sequence Classification Algorithm

Matthew Cotten, Bas Oude Munnink, [ ... ], Lia van der Hoek

Solution Structure of CXCL5 — A Novel Chemokine and Adipokine Implicated in Inflammation and Obesity

Krishna Mohan Sepuru, Krishna Mohan Poluri, Krishna Rajarathnam

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