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Sequence analysis

Effective Automated Feature Construction and Selection for Classification of Biological Sequences

Uday Kamath, Kenneth De Jong, Amarda Shehu

Phylodynamic Analysis Reveals CRF01_AE Dissemination between Japan and Neighboring Asian Countries and the Role of Intravenous Drug Use in Transmission

Teiichiro Shiino, Junko Hattori, [ ... ], Japanese Drug Resistance HIV-1 Surveillance Network

Quantifying the Effect of Ribosomal Density on mRNA Stability

Shlomit Edri, Tamir Tuller

Quickly Finding Orthologs as Reciprocal Best Hits with BLAT, LAST, and UBLAST: How Much Do We Miss?

Natalie Ward, Gabriel Moreno-Hagelsieb

Identification of a Major Phosphopeptide in Human Tristetraprolin by Phosphopeptide Mapping and Mass Spectrometry

Heping Cao, Leesa J. Deterding, Perry J. Blackshear

Feline Calicivirus Can Tolerate Gross Changes of Its Minor Capsid Protein Expression Levels Induced by Changing Translation Reinitiation Frequency or Use of a Separate VP2-Coding mRNA

Maria Haß, Christine Luttermann, Gregor Meyers

A Good Compromise: Rapid and Robust Species Proxies for Inventorying Biodiversity Hotspots Using the Terebridae (Gastropoda: Conoidea)

Maria Vittoria Modica, Nicolas Puillandre, [ ... ], Mandë Holford

An Integrated SNP Mining and Utilization (ISMU) Pipeline for Next Generation Sequencing Data

Sarwar Azam, Abhishek Rathore, [ ... ], Rajeev K. Varshney

Some Limitations of Public Sequence Data for Phylogenetic Inference (in Plants)

Cody E. Hinchliff, Stephen Andrew Smith

Single-Nucleotide Mutation Matrix: A New Model for Predicting the NF-κB DNA Binding Sites

Wenxin Du, Jing Gao, Tingting Wang, Jinke Wang

Assessment of the Impact of Using a Reference Transcriptome in Mapping Short RNA-Seq Reads

Shanrong Zhao

Novel Bioinformatics Method for Identification of Genome-Wide Non-Canonical Spliced Regions Using RNA-Seq Data

Yongsheng Bai, Justin Hassler, [ ... ], Maureen A. Sartor

Ancient Origins of RGK Protein Function: Modulation of Voltage-Gated Calcium Channels Preceded the Protostome and Deuterostome Split

Henry L. Puhl III, Van B. Lu, [ ... ], Stephen R. Ikeda

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