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Sequence alignment

Multi-modal deep learning for intelligent landscape design generation: A novel CBS3-LandGen model

Mingzhen Lu, Lili Shi

published 24 Jul 2025

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cONcat: Computational reconstruction of concatenated fragments from long Oxford Nanopore reads

Alexander J. Petri, Mai Thi-Huyen Nguyen, Anjali Rajwar, Erik Benson, Kristoffer Sahlin

published 24 Jul 2025

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Bioinformatics and modelling studies of FhuD, the periplasmic siderophore binding protein from the plant pathogen Erwinia amylovora

Sharda Bharti, Lavinia Carlini, Alfonso Esposito, Stefano Benini

published 23 Jul 2025

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Off-target sequence variations driven by the intrinsic properties of the Cas–sgRNA–DNA complex in genome editing

Celine Kurniawan, Takeshi Itoh

published 18 Jul 2025

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A high quality genome of the common swamp pitcher plant (Nepenthes mirabilis) using PacBio HiFi sequencing

Christopher J. Jackson, Todd G.B. McLay, Gareth D. Holmes, Theodore R. Allnutt, Alastair S. Robinson

published 10 Jul 2025

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A syllable-character collaborative model for enhanced Pinyin and Chinese recognition

Zeyuan Chen, Cheng Zhong, Danyang Chen

published 07 Jul 2025

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Tracing the function expansion for a primordial protein fold in the era of fold-based function prediction: β-trefoil

Moushmi Goswami, Subhashini Srinivasan

published 03 Jul 2025

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Loss of a major venom toxin gene in a Western Diamondback rattlesnake population

Noah L. Dowell, Elizabeth Cahill, Sean B. Carroll

published 03 Jul 2025

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Few-shot network intrusion detection method based on multi-domain fusion and cross-attention

Congyuan Xu, Donghui Li, Zihao Liu, Jun Yang, Qinfeng Shen, Ningbing Tong

published 02 Jul 2025

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Soft label collaborative view consistency enhancement with application to incomplete multi-view clustering

Jie Zhang, Jiali Tang

published 01 Jul 2025

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Assessment of the genetic diversity of Atlantic bottlenose dolphin (Tursiops truncatus) strandings in the Mississippi Sound (USA)

Mark A. Arick II, Nelmarie Landrau-Giovannetti, Chuan-Yu Hsu, Corrinne E. Grover, Stephen Reichley, Zenaida V. Magbanua, Olga Pechanova, Debra Moore, Ehsan Kayal, Anna Linhoss, Theresa Madrigal, Mark Peterman, Ozan Ozdemir, Daniel G. Peterson, Moby Solangi, Beth Peterman, Mark Lawrence, Attila Karsi

published 25 Jun 2025

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A PCR primer design method for identifying spider mite species using k-mer counting

Tomoko Matsuda, Hironori Sakamoto, Takumi Kayukawa, Yasuki Kitashima, Toshinori Kozaki, Tetsuo Gotoh

published 09 Jun 2025

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Discovery of novel targets for important human and plant fungal pathogens via an automated computational pipeline HitList

David E. Condon, Brenda K. Schroeder, Paul A. Rowley, F. Marty Ytreberg

published 03 Jun 2025

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