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Sequence alignment

Clade-1 Vap virulence proteins of Rhodococcus equi are associated with the cell surface and support intracellular growth in macrophages

Zeynep Yerlikaya, Raúl Miranda-CasoLuengo, Yuting Yin, Cheng Cheng, Wim G. Meijer

published 06 Jan 2025

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Unveiling the endogenous CRISPR-Cas system in Pseudomonas aeruginosa PAO1

Javier Alejandro Delgado-Nungaray, Luis Joel Figueroa-Yáñez, Eire Reynaga-Delgado, Ana Montserrat Corona-España, Orfil Gonzalez-Reynoso

published 31 Dec 2024

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Bioinformatics analysis of myelin-microbe interactions suggests multiple types of molecular mimicry in the pathogenesis of multiple sclerosis

Ali Bigdeli, Mostafa Ghaderi-Zefrehei, Bluma J. Lesch, Mehrdad Behmanesh, S. Shahriar Arab

published 30 Dec 2024

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Area under the ROC Curve has the most consistent evaluation for binary classification

Jing Li

published 23 Dec 2024

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Does the site of research evidence generation impact on its translation to clinical practice? A protocol paper

Dai Pu, Debra Mitchell, Natasha Brusco, Kelly Stephen, Ana Hutchinson, Anna Griffith, Cassie McDonald, Lucy Irwin, Cathy Said, Lisa O’Brien, Jennifer Weller-Newton, Terry P. Haines

published 13 Dec 2024

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Molecular and morphological investigations of two new species in Qinia and Cymbella (Bacillariophyceae: Cymbellales) from China

Jingshen Li, Andrei Mironov, Yutong Jiang, Jinyan Liang, John P. Kociolek, Yevhen Maltsev, Yawen Fan, Yan Liu, Maxim Kulikovskiy

published 13 Dec 2024

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Introducing a blocked procedure in nonparametric CD-CAT

Jiahui Zhang, Yuqing Yuan, Ziying Qiu, Feng Li

published 10 Dec 2024

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stilPCR increases the effective sequencing length of Illumina targeted next-generation sequencing

Jason D. Limberis, Roland J. Nagel, Soumitesh Chakravorty, Dena Block, Scott Dewell, Alina Nalyvayko, Zach Howard, Grant Theron, Rouxjeane Venter, John Z. Metcalfe

published 09 Dec 2024

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Genomic assessment of targets implicated in Rhipicephalus microplus acaricide resistance

Christina Meiring, Michel Labuschagne

published 05 Dec 2024

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SCRMshaw: Supervised cis-regulatory module prediction for insect genomes

Hasiba Asma, Luna Liu, Marc S. Halfon

published 05 Dec 2024

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MetaCONNET: A metagenomic polishing tool for long-read assemblies

Bingru Sun, Jian Guo, Hao Jin, Zijie Jin, Yaping Sun, Yuanchen Mao, Fuli Xie, Yun He, Zhihong Sun, Wei Li, Igor Ivanov, Hui Tian

published 03 Dec 2024

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Specific PCR primer designed from genome data for rapid detection of Fusarium oxysporum f. sp. cubense tropical race 4 in the Cavendish banana

Shunsuke Nozawa, Dan Charlie Joy Pangilinan, G. Alvindia Dionisio, Kyoko Watanabe

published 02 Dec 2024

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Applying a cytochrome c oxidase I barcode for Leishmania species typing

Carlos Mata-Somarribas, Grazielle Cardoso das Graças, Luiza de Oliveira R. Pereira, Mariana Côrtes Boité, Lilian Motta Cantanhêde, Camila Patrício Braga Filgueira, Adrián Fallas, Leana Quirós-Rojas, Karina A. Morelli, Gabriel Eduardo Melim Ferreira, Elisa Cupolillo

published 02 Dec 2024

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