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Sequence alignment

Assembly of the Complete Sitka Spruce Chloroplast Genome Using 10X Genomics’ GemCode Sequencing Data

Lauren Coombe, René L. Warren, Shaun D. Jackman, Chen Yang, Benjamin P. Vandervalk, Richard A. Moore, Stephen Pleasance, Robin J. Coope, Joerg Bohlmann, Robert A. Holt, Steven J. M. Jones, Inanc Birol

published 15 Sep 2016

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Novel Bovine Papillomavirus Type Discovered by Rolling-Circle Amplification Coupled with Next-Generation Sequencing

Flavio R. C. da Silva, Samuel P. Cibulski, Cíntia Daudt, Matheus N. Weber, Lorena L. B. Guimarães, André F. Streck, Fabiana Q. Mayer, Paulo M. Roehe, Cláudio W. Canal

published 08 Sep 2016

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Single Nucleotide Polymorphism Discovery in Bovine Pituitary Gland Using RNA-Seq Technology

Chandra Shekhar Pareek, Rafał Smoczyński, Haja N. Kadarmideen, Piotr Dziuba, Paweł Błaszczyk, Marcin Sikora, Paulina Walendzik, Tomasz Grzybowski, Mariusz Pierzchała, Jarosław Horbańczuk, Agnieszka Szostak, Magdalena Ogluszka, Lech Zwierzchowski, Urszula Czarnik, Leyland Fraser, Przemysław Sobiech, Krzysztof Wąsowicz, Brian Gelfand, Yaping Feng, Dibyendu Kumar

published 08 Sep 2016

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Sequence Assembly of Yarrowia lipolytica Strain W29/CLIB89 Shows Transposable Element Diversity

Christophe Magnan, James Yu, Ivan Chang, Ethan Jahn, Yuzo Kanomata, Jenny Wu, Michael Zeller, Melanie Oakes, Pierre Baldi, Suzanne Sandmeyer

published 07 Sep 2016

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Evolution of the Exon-Intron Structure in Ciliate Genomes

Vladyslav S. Bondarenko, Mikhail S. Gelfand

published 07 Sep 2016

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A Species-Level Phylogeny of Extant Snakes with Description of a New Colubrid Subfamily and Genus

Alex Figueroa, Alexander D. McKelvy, L. Lee Grismer, Charles D. Bell, Simon P. Lailvaux

published 07 Sep 2016

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The Mitochondrial Cytochrome Oxidase Subunit I Gene Occurs on a Minichromosome with Extensive Heteroplasmy in Two Species of Chewing Lice, Geomydoecus aurei and Thomomydoecus minor

Lucas L. Pietan, Theresa A. Spradling, James W. Demastes

published 02 Sep 2016

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Characterization of a Non-Canonical Signal Peptidase Cleavage Site in a Replication Protein from Tomato Ringspot Virus

Ting Wei, Joan Chisholm, Hélène Sanfaçon

published 02 Sep 2016

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Comparative Analysis of Immune Repertoires between Bactrian Camel's Conventional and Heavy-Chain Antibodies

Xinyang Li, Xiaobo Duan, Kai Yang, Wei Zhang, Changjiang Zhang, Longfei Fu, Zhe Ren, Changxi Wang, Jinghua Wu, Ruxue Lu, Yanrui Ye, Mengying He, Chao Nie, Naibo Yang, Jian Wang, Huanming Yang, Xiao Liu, Wen Tan

published 02 Sep 2016

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Computational Analysis of the Ligand Binding Site of the Extracellular ATP Receptor, DORN1

Cuong The Nguyen, Kiwamu Tanaka, Yangrong Cao, Sung-Hwan Cho, Dong Xu, Gary Stacey

published 01 Sep 2016

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aPPRove: An HMM-Based Method for Accurate Prediction of RNA-Pentatricopeptide Repeat Protein Binding Events

Thomas Harrison, Jaime Ruiz, Daniel B. Sloan, Asa Ben-Hur, Christina Boucher

published 25 Aug 2016

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A Fast Alignment-Free Approach for De Novo Detection of Protein Conserved Regions

Armen Abnousi, Shira L. Broschat, Ananth Kalyanaraman

published 23 Aug 2016

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A Diverse Family of Host-Defense Peptides (Piscidins) Exhibit Specialized Anti-Bacterial and Anti-Protozoal Activities in Fishes

Scott A. Salger, Katherine R. Cassady, Benjamin J. Reading, Edward J. Noga

published 23 Aug 2016

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