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Sequence alignment

An Alignment-Free Algorithm in Comparing the Similarity of Protein Sequences Based on Pseudo-Markov Transition Probabilities among Amino Acids

Yushuang Li, Tian Song, [ ... ], Jialiang Yang

Advantages of an Improved Rhesus Macaque Genome for Evolutionary Analyses

Julien S. Gradnigo, Abhishek Majumdar, Robert B. Norgren Jr, Etsuko N. Moriyama

IBiSA_Tools: A Computational Toolkit for Ion-Binding State Analysis in Molecular Dynamics Trajectories of Ion Channels

Kota Kasahara, Kengo Kinoshita

InFusion: Advancing Discovery of Fusion Genes and Chimeric Transcripts from Deep RNA-Sequencing Data

Konstantin Okonechnikov, Aki Imai-Matsushima, [ ... ], Fernando Garcia-Alcalde

dCITE: Measuring Necessary Cladistic Information Can Help You Reduce Polytomy Artefacts in Trees

Michael J. Wise

Multivalent Interactions of Human Primary Amine Oxidase with the V and C2₂ Domains of Sialic Acid-Binding Immunoglobulin-Like Lectin-9 Regulate Its Binding and Amine Oxidase Activity

Heli Elovaara, Vimal Parkash, [ ... ], Tiina A. Salminen

Accelerating Information Retrieval from Profile Hidden Markov Model Databases

Ahmad Tamimi, Yaqoub Ashhab, Hashem Tamimi

Sam2bam: High-Performance Framework for NGS Data Preprocessing Tools

Takeshi Ogasawara, Yinhe Cheng, Tzy-Hwa Kathy Tzeng

Genomes of Gardnerella Strains Reveal an Abundance of Prophages within the Bladder Microbiome

Kema Malki, Jason W. Shapiro, [ ... ], Catherine Putonti

A Genetic Algorithm for Diploid Genome Reconstruction Using Paired-End Sequencing

Chuan-Kang Ting, Choun-Sea Lin, [ ... ], Yao-Ting Huang

PRIMO: An Interactive Homology Modeling Pipeline

Rowan Hatherley, David K. Brown, Michael Glenister, Özlem Tastan Bishop

Identification of the Core Set of Carbon-Associated Genes in a Bioenergy Grassland Soil

Adina Howe, Fan Yang, [ ... ], Kirsten S. Hofmockel

Identification of Hybrids in Potamogeton: Incongruence between Plastid and ITS Regions Solved by a Novel Barcoding Marker PHYB

Tao Yang, Tian-lei Zhang, You-hao Guo, Xing Liu

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