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Sequence alignment

The RAS-Effector Interface: Isoform-Specific Differences in the Effector Binding Regions

Hossein Nakhaeizadeh, Ehsan Amin, Saeideh Nakhaei-Rad, Radovan Dvorsky, Mohammad Reza Ahmadian

published 09 Dec 2016

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Analysis of Domain Architecture and Phylogenetics of Family 2 Glycoside Hydrolases (GH2)

David Talens-Perales, Anna Górska, Daniel H. Huson, Julio Polaina, Julia Marín-Navarro

published 08 Dec 2016

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Determination of a Screening Metric for High Diversity DNA Libraries

Nicholas J. Guido, Steven Handerson, Elaine M. Joseph, Devin Leake, Li A. Kung

published 08 Dec 2016

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An Alignment-Free Algorithm in Comparing the Similarity of Protein Sequences Based on Pseudo-Markov Transition Probabilities among Amino Acids

Yushuang Li, Tian Song, Jiasheng Yang, Yi Zhang, Jialiang Yang

published 05 Dec 2016

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Advantages of an Improved Rhesus Macaque Genome for Evolutionary Analyses

Julien S. Gradnigo, Abhishek Majumdar, Robert B. Norgren Jr, Etsuko N. Moriyama

published 02 Dec 2016

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IBiSA_Tools: A Computational Toolkit for Ion-Binding State Analysis in Molecular Dynamics Trajectories of Ion Channels

Kota Kasahara, Kengo Kinoshita

published 01 Dec 2016

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InFusion: Advancing Discovery of Fusion Genes and Chimeric Transcripts from Deep RNA-Sequencing Data

Konstantin Okonechnikov, Aki Imai-Matsushima, Lukas Paul, Alexander Seitz, Thomas F. Meyer, Fernando Garcia-Alcalde

published 01 Dec 2016

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dCITE: Measuring Necessary Cladistic Information Can Help You Reduce Polytomy Artefacts in Trees

Michael J. Wise

published 29 Nov 2016

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Multivalent Interactions of Human Primary Amine Oxidase with the V and C2₂ Domains of Sialic Acid-Binding Immunoglobulin-Like Lectin-9 Regulate Its Binding and Amine Oxidase Activity

Heli Elovaara, Vimal Parkash, Ruth Fair-Mäkelä, Outi M. H. Salo-Ahen, Gabriela Guédez, Eva Bligt-Lindén, Janne Grönholm, Sirpa Jalkanen, Tiina A. Salminen

published 28 Nov 2016

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Accelerating Information Retrieval from Profile Hidden Markov Model Databases

Ahmad Tamimi, Yaqoub Ashhab, Hashem Tamimi

published 22 Nov 2016

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Sam2bam: High-Performance Framework for NGS Data Preprocessing Tools

Takeshi Ogasawara, Yinhe Cheng, Tzy-Hwa Kathy Tzeng

published 18 Nov 2016

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Genomes of Gardnerella Strains Reveal an Abundance of Prophages within the Bladder Microbiome

Kema Malki, Jason W. Shapiro, Travis K. Price, Evann E. Hilt, Krystal Thomas-White, Trina Sircar, Amy B. Rosenfeld, Gina Kuffel, Michael J. Zilliox, Alan J. Wolfe, Catherine Putonti

published 18 Nov 2016

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A Genetic Algorithm for Diploid Genome Reconstruction Using Paired-End Sequencing

Chuan-Kang Ting, Choun-Sea Lin, Ming-Tsai Chan, Jian-Wei Chen, Sheng-Yu Chuang, Yao-Ting Huang

published 18 Nov 2016

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