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Sequence alignment

When Whole-Genome Alignments Just Won't Work: kSNP v2 Software for Alignment-Free SNP Discovery and Phylogenetics of Hundreds of Microbial Genomes

Shea N. Gardner, Barry G. Hall

The Complete Chloroplast Genome Sequence of Date Palm (Phoenix dactylifera L.)

Meng Yang, Xiaowei Zhang, [ ... ], Jun Yu

Estimation of a Killer Whale (Orcinus orca) Population’s Diet Using Sequencing Analysis of DNA from Feces

Michael J. Ford, Jennifer Hempelmann, [ ... ], Linda K. Park

Blueprint for a High-Performance Biomaterial: Full-Length Spider Dragline Silk Genes

Nadia A. Ayoub, Jessica E. Garb, [ ... ], Cheryl Y. Hayashi

The Sorcerer II Global Ocean Sampling Expedition: Metagenomic Characterization of Viruses within Aquatic Microbial Samples

Shannon J. Williamson, Douglas B. Rusch, [ ... ], J. Craig Venter

Rediscovery of an Endemic Vertebrate from the Remote Islas Revillagigedo in the Eastern Pacific Ocean: The Clarión Nightsnake Lost and Found

Daniel G. Mulcahy, Juan E. Martínez-Gómez, [ ... ], George R. Zug

Palytoxin Found in Palythoa sp. Zoanthids (Anthozoa, Hexacorallia) Sold in the Home Aquarium Trade

Jonathan R. Deeds, Sara M. Handy, Kevin D. White, James D. Reimer

The Nod-Like Receptor (NLR) Family: A Tale of Similarities and Differences

Martina Proell, Stefan J. Riedl, [ ... ], Robert Schwarzenbacher

The Phylogenetic Diversity of Metagenomes

Steven W. Kembel, Jonathan A. Eisen, Katherine S. Pollard, Jessica L. Green

Sex in Cheese: Evidence for Sexuality in the Fungus Penicillium roqueforti

Jeanne Ropars, Joëlle Dupont, [ ... ], Manuela López-Villavicencio

Pebble and Rock Band: Heuristic Resolution of Repeats and Scaffolding in the Velvet Short-Read de Novo Assembler

Daniel R. Zerbino, Gayle K. McEwen, Elliott H. Margulies, Ewan Birney

Identification and Characterization of Circular RNAs As a New Class of Putative Biomarkers in Human Blood

Sebastian Memczak, Panagiotis Papavasileiou, Oliver Peters, Nikolaus Rajewsky

Beyond Reasonable Doubt: Evolution from DNA Sequences

W. Timothy J. White, Bojian Zhong, David Penny

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