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Sequence alignment

Widespread evolutionary crosstalk among protein domains in the context of multi-domain proteins

David Jakubec, Miroslav Kratochvíl, Jiří Vymĕtal, Jiří Vondrášek

published 31 Aug 2018

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Whole exome sequencing in Finnish families identifies new candidate genes for osteoarthritis

Sini Skarp, Olli-Pekka Kämäräinen, Gong-Hong Wei, Eveliina Jakkula, Ilkka Kiviranta, Heikki Kröger, Juha Auvinen, Petri Lehenkari, Leena Ala-Kokko, Minna Männikkö

published 29 Aug 2018

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Re-annotation of 12,495 prokaryotic 16S rRNA 3’ ends and analysis of Shine-Dalgarno and anti-Shine-Dalgarno sequences

Mohammad Ruhul Amin, Alisa Yurovsky, Yuping Chen, Steve Skiena, Bruce Futcher

published 23 Aug 2018

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Structural analysis of human NHLRC2, mutations of which are associated with FINCA disease

Ekaterina Biterova, Alexander Ignatyev, Johanna Uusimaa, Reetta Hinttala, Lloyd W. Ruddock

published 23 Aug 2018

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A novel QoS-aware prediction approach for dynamic web services

Yiguang Song, Li Hu, Ming Yu

published 22 Aug 2018

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Genomic analysis of an Argentinean isolate of Spodoptera frugiperda granulovirus reveals that various baculoviruses code for Lef-7 proteins with three F-box domains

María Leticia Ferrelli, Matías Luis Pidre, Pablo Daniel Ghiringhelli, Sofía Torres, María Laura Fabre, Tomás Masson, Maia Tatiana Cédola, Alicia Sciocco-Cap, Víctor Romanowski

published 22 Aug 2018

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DNA barcoding of Aristolochia plants and development of species-specific multiplex PCR to aid HPTLC in ascertainment of Aristolochia herbal materials

Piroonrat Dechbumroong, Surattana Aumnouypol, Jessada Denduangboripant, Suchada Sukrong

published 20 Aug 2018

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Functional characterization of a lytic polysaccharide monooxygenase from the thermophilic fungus Myceliophthora thermophila

Marco A. S. Kadowaki, Anikó Várnai, John-Kristian Jameson, Ana E. T. Leite, Antonio J. Costa-Filho, Patricia S. Kumagai, Rolf A. Prade, Igor Polikarpov, Vincent G. H. Eijsink

published 20 Aug 2018

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Designing bacterial signaling interactions with coevolutionary landscapes

Ryan R. Cheng, Ellinor Haglund, Nicholas S. Tiee, Faruck Morcos, Herbert Levine, Joseph A. Adams, Patricia A. Jennings, José N. Onuchic

published 20 Aug 2018

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Assembly and comparative analysis of the complete mitochondrial genome sequence of Sophora japonica ‘JinhuaiJ2’

Yancai Shi, Yang Liu, Shouzhou Zhang, Rong Zou, Jianmin Tang, Weixue Mu, Yang Peng, Shanshan Dong

published 16 Aug 2018

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GRASShopPER—An algorithm for de novo assembly based on GPU alignments

Aleksandra Swiercz, Wojciech Frohmberg, Michal Kierzynka, Pawel Wojciechowski, Piotr Zurkowski, Jan Badura, Artur Laskowski, Marta Kasprzak, Jacek Blazewicz

published 16 Aug 2018

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iMapSplice: Alleviating reference bias through personalized RNA-seq alignment

Xinan Liu, James N. MacLeod, Jinze Liu

published 10 Aug 2018

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Metagenomic analysis of rhizosphere microflora of oil-contaminated soil planted with barley and alfalfa

Vinod Kumar, Sabah AlMomin, Hamed Al-Aqeel, Fadila Al-Salameen, Sindhu Nair, Anisha Shajan

published 09 Aug 2018

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