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Sequence alignment

Large scale evaluation of differences between network-based and pairwise sequence-alignment-based methods of dendrogram reconstruction

Daniel Gamermann, Arnau Montagud, [ ... ], Javier F. Urchueguía

Structural analysis of the recognition of the -35 promoter element by SigW from Bacillus subtilis

Eunju Kwon, Shankar Raj Devkota, [ ... ], Dong Young Kim

Borrelia reloaded" (PLoS ONE 13(12): e0208432)">Distinction between Borrelia and Borreliella is more robustly supported by molecular and phenotypic characteristics than all other neighbouring prokaryotic genera: Response to Margos' et al. "The genus Borrelia reloaded" (PLoS ONE 13(12): e0208432)

Radhey S. Gupta

The number of domains in the ribosomal protein S1 as a hallmark of the phylogenetic grouping of bacteria

Andrey V. Machulin, Evgenia I. Deryusheva, Olga M. Selivanova, Oxana V. Galzitskaya

HPC: Hierarchical phylogeny construction

Anindya Das, Xiaoqiu Huang

TreeCluster: Clustering biological sequences using phylogenetic trees

Metin Balaban, Niema Moshiri, [ ... ], Siavash Mirarab

Faecalibacterium diversity in dairy cow milk

Keith W. Savin, Jody Zawadzki, [ ... ], Benjamin G. Cocks

rawMSA: End-to-end Deep Learning using raw Multiple Sequence Alignments

Claudio Mirabello, Björn Wallner

Viral taxonomy derived from evolutionary genome relationships

Tyler J. Dougan, Stephen R. Quake

Small-RNA analysis of pre-basic mother plants and conserved accessions of plant genetic resources for the presence of viruses

Minna-Liisa Rajamäki, Anne Lemmetty, [ ... ], Jari P. T. Valkonen

Identifying genetic markers for a range of phylogenetic utility–From species to family level

Bokyung Choi, Michael D. Crisp, [ ... ], Carsten Külheim

The Dps4 from Nostoc punctiforme ATCC 29133 is a member of His-type FOC containing Dps protein class that can be broadly found among cyanobacteria

Christoph Howe, Vamsi K. Moparthi, [ ... ], Karin Stensjö

A system for site-specific integration of transgenes in mammalian cells

Xiuling Chi, Qi Zheng, [ ... ], Ling-Jie Kong

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