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Sequence alignment

Complete chloroplast genome sequence and phylogenetic analysis of Spathiphyllum 'Parrish'

Xiao-Fei Liu, Gen-Fa Zhu, Dong-Mei Li, Xiao-Jing Wang

published 23 Oct 2019

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RFQAmodel: Random Forest Quality Assessment to identify a predicted protein structure in the correct fold

Clare E. West, Saulo H. P. de Oliveira, Charlotte M. Deane

published 21 Oct 2019

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Evolutionary history and classification of Micropia retroelements in Drosophilidae species

Juliana Cordeiro, Tuane Letícia Carvalho, Vera Lúcia da Silva Valente, Lizandra Jaqueline Robe

published 17 Oct 2019

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Antimicrobial resistance (AMR) and molecular characterization of Neisseria gonorrhoeae in Ghana, 2012-2015

Naiki Attram, Bright Agbodzi, Helena Dela, Eric Behene, Edward O. Nyarko, Nicholas N. A. Kyei, John A. Larbi, Bernard W. L. Lawson, Kennedy K. Addo, Mercy J. Newman, Christopher A. Duplessis, Nehkonti Adams, Magnus Unemo, Andrew G. Letizia

published 10 Oct 2019

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A tailored approach to fusion transcript identification increases diagnosis of rare inherited disease

Gavin R. Oliver, Xiaojia Tang, Laura E. Schultz-Rogers, Noemi Vidal-Folch, W. Garrett Jenkinson, Tanya L. Schwab, Krutika Gaonkar, Margot A. Cousin, Asha Nair, Shubham Basu, Pritha Chanana, Devin Oglesbee, Eric W. Klee

published 02 Oct 2019

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Identification and evolutionary characterization of salt-responsive transcription factors in the succulent halophyte Suaeda fruticosa

Joann Diray-Arce, Alisa Knowles, Anton Suvorov, Jacob O’Brien, Collin Hansen, Seth M. Bybee, Bilquees Gul, M. Ajmal Khan, Brent L. Nielsen

published 23 Sep 2019

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Synteny and phylogenetic analysis of paralogous thyrostimulin beta subunits (GpB5) in vertebrates

Krist Hausken, Berta Levavi-Sivan

published 19 Sep 2019

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Genomic characterization of the complete terpene synthase gene family from Cannabis sativa

Keith D. Allen, Kevin McKernan, Christopher Pauli, Jim Roe, Anthony Torres, Reggie Gaudino

published 12 Sep 2019

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Quantitative detection of ALK fusion breakpoints in plasma cell-free DNA from patients with non-small cell lung cancer using PCR-based target sequencing with a tiling primer set and two-step mapping/alignment

Kei Kunimasa, Kikuya Kato, Fumio Imamura, Yoji Kukita

published 12 Sep 2019

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ViraMiner: Deep learning on raw DNA sequences for identifying viral genomes in human samples

Ardi Tampuu, Zurab Bzhalava, Joakim Dillner, Raul Vicente

published 11 Sep 2019

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Construction of pseudomolecule sequences of Brassica rapa ssp. pekinensis inbred line CT001 and analysis of spontaneous mutations derived via sexual propagation

Jee-Soo Park, Ji-Hyun Park, Young-Doo Park

published 09 Sep 2019

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Homogenous HIV-1 subtype B from the Brazilian Amazon with infrequent diverse BF1 recombinants, subtypes F1 and C among blood donors

Myuki Alfaia Esashika Crispim, Mônica Nogueira da Guarda Reis, Claudia Abrahim, Dagmar Kiesslich, Nelson Fraiji, Gonzalo Bello, Mariane Martins Araújo Stefani

published 09 Sep 2019

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gapFinisher: A reliable gap filling pipeline for SSPACE-LongRead scaffolder output

Juhana I. Kammonen, Olli-Pekka Smolander, Lars Paulin, Pedro A. B. Pereira, Pia Laine, Patrik Koskinen, Jukka Jernvall, Petri Auvinen

published 09 Sep 2019

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