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Sequence alignment

Comparison of sequencing methods and data processing pipelines for whole genome sequencing and minority single nucleotide variant (mSNV) analysis during an influenza A/H5N8 outbreak

Marjolein J. Poen, Anne Pohlmann, Clara Amid, Theo M. Bestebroer, Sharon M. Brookes, Ian H. Brown, Helen Everett, Claudia M. E. Schapendonk, Rachel D. Scheuer, Saskia L. Smits, Martin Beer, Ron A. M. Fouchier, Richard J. Ellis

published 20 Feb 2020

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Phylogenetic analysis reveals an ancient gene duplication as the origin of the MdtABC efflux pump

Kamil Górecki, Megan M. McEvoy

published 12 Feb 2020

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Diversity of bacteriophages encoding Panton-Valentine leukocidin in temporally and geographically related Staphylococcus aureus

Geoffrey W. Coombs, Sarah L. Baines, Benjamin P. Howden, Krister M. Swenson, Frances G. O’Brien

published 10 Feb 2020

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The number of k-mer matches between two DNA sequences as a function of k and applications to estimate phylogenetic distances

Sophie Röhling, Alexander Linne, Jendrik Schellhorn, Morteza Hosseini, Thomas Dencker, Burkhard Morgenstern

published 10 Feb 2020

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Informatics investigations into anti-thyroid drug induced agranulocytosis associated with multiple HLA-B alleles

Kerry A. Ramsbottom, Daniel F. Carr, Daniel J. Rigden, Andrew R. Jones

published 06 Feb 2020

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Hemocyanin of the caenogastropod Pomacea canaliculata exhibits evolutionary differences among gastropod clades

Ignacio Rafael Chiumiento, Santiago Ituarte, Jin Sun, Jian Wen Qiu, Horacio Heras, Marcos Sebastián Dreon

published 30 Jan 2020

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Characterization of sequence variability hotspots in Cranichideae plastomes (Orchidaceae, Orchidoideae)

Eric de Camargo Smidt, Michelle Zavala Páez, Leila do Nascimento Vieira, Juan Viruel, Valter Antônio de Baura, Eduardo Balsanelli, Emanuel Maltempi de Souza, Mark W. Chase

published 28 Jan 2020

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Recombination and gene loss occur simultaneously during bacterial horizontal gene transfer

Bert Ely

published 28 Jan 2020

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Phylogenetic relationships of Atractylodes lancea, A. chinensis and A. macrocephala, revealed by complete plastome and nuclear gene sequences

Liqiang Wang, Hui Zhang, Xi Wu, Ziyue Wang, Weiwei Fang, Mei Jiang, Haimei Chen, Linfang Huang, Chang Liu

published 28 Jan 2020

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A graph-based algorithm for RNA-seq data normalization

Diem-Trang Tran, Aditya Bhaskara, Balagurunathan Kuberan, Matthew Might

published 24 Jan 2020

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Disease-relevant mutations alter amino acid co-evolution networks in the second nucleotide binding domain of CFTR

Gabrianne Ivey, Robert T. Youker

published 24 Jan 2020

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RNAmountAlign: Efficient software for local, global, semiglobal pairwise and multiple RNA sequence/structure alignment

Amir H. Bayegan, Peter Clote

published 24 Jan 2020

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Analysis of the Rdr1 gene family in different Rosaceae genomes reveals an origin of an R-gene cluster after the split of Rubeae within the Rosoideae subfamily

Ina Menz, Deepika Lakhwani, Jérémy Clotault, Marcus Linde, Fabrice Foucher, Thomas Debener

published 23 Jan 2020

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