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Sequence alignment

Thousands of protein linear motif classes may still be undiscovered

Denys Bulavka, Ariel A. Aptekmann, Nicolás A. Méndez, Teresa Krick, Ignacio E. Sánchez

published 03 May 2021

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Refining pairwise sequence alignments of membrane proteins by the incorporation of anchors

René Staritzbichler, Edoardo Sarti, Emily Yaklich, Antoniya Aleksandrova, Marcus Stamm, Kamil Khafizov, Lucy R. Forrest

published 30 Apr 2021

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The absence of thrombin-like activity in Bothrops erythromelas venom is due to the deletion of the snake venom thrombin-like enzyme gene

Nicholas P. Lotto, Jeanne C. de Albuquerque Modesto, Sávio S. Sant’Anna, Kathleen F. Grego, Miriam C. Guarnieri, Rejane M. Lira-da-Silva, Marcelo L. Santoro, Nancy Oguiura

published 27 Apr 2021

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Comprehensive at-arrival transcriptomic analysis of post-weaned beef cattle uncovers type I interferon and antiviral mechanisms associated with bovine respiratory disease mortality

Matthew A. Scott, Amelia R. Woolums, Cyprianna E. Swiderski, Andy D. Perkins, Bindu Nanduri, David R. Smith, Brandi B. Karisch, William B. Epperson, John R. Blanton

published 26 Apr 2021

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A phylogenetic study of the members of the MAPK and MEK families across Viridiplantae

José Manuel González-Coronel, Gustavo Rodríguez-Alonso, Ángel Arturo Guevara-García

published 23 Apr 2021

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iBLAST: Incremental BLAST of new sequences via automated e-value correction

Sajal Dash, Sarthok Rasique Rahman, Heather M. Hines, Wu-chun Feng

published 22 Apr 2021

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Surveillance of densoviruses and mesomycetozoans inhabiting grossly normal tissues of three Aotearoa New Zealand asteroid species

Ian Hewson, Mary A. Sewell

published 22 Apr 2021

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Identification and classification of innexin gene transcripts in the central nervous system of the terrestrial slug Limax valentianus

Hisayo Sadamoto, Hironobu Takahashi, Suguru Kobayashi, Hirooki Kondoh, Hiroshi Tokumaru

published 15 Apr 2021

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Molecular phylogeny and species delimitation of the genus Tonkinacris (Orthoptera, Acrididae, Melanoplinae) from China

Haojie Wang, Bing Jiang, Jingxiao Gu, Tao Wei, Liliang Lin, Yuan Huang, Dan Liang, Jianhua Huang

published 13 Apr 2021

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Mapping of sequences in the 5’ region and 3’ UTR of tomato ringspot virus RNA2 that facilitate cap-independent translation of reporter transcripts in vitro

Dinesh Babu Paudel, Hélène Sanfaçon

published 09 Apr 2021

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De novo assembly of the freshwater prawn Macrobrachium carcinus brain transcriptome for identification of potential targets for antibody development

Jonathan L. Crooke-Rosado, Sara C. Diaz-Mendez, Yamil E. Claudio-Roman, Nilsa M. Rivera, Maria A. Sosa

published 09 Apr 2021

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CaBagE: A Cas9-based Background Elimination strategy for targeted, long-read DNA sequencing

Amelia D. Wallace, Thomas A. Sasani, Jordan Swanier, Brooke L. Gates, Jeff Greenland, Brent S. Pedersen, Katherine E. Varley, Aaron R. Quinlan

published 08 Apr 2021

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Bioinformatics-based prediction of conformational epitopes for human parechovirus

Hao Rong, Liping Wang, Liuying Gao, Yulu Fang, Qin Chen, Jianli Hu, Meng Ye, Qi Liao, Lina Zhang, Changzheng Dong

published 01 Apr 2021

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