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Sequence alignment

An Automated Phylogenetic Tree-Based Small Subunit rRNA Taxonomy and Alignment Pipeline (STAP)

Dongying Wu, Amber Hartman, Naomi Ward, Jonathan A. Eisen

published 02 Jul 2008

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Simultaneous Assessment of Soil Microbial Community Structure and Function through Analysis of the Meta-Transcriptome

Tim Urich, Anders Lanzén, Ji Qi, Daniel H. Huson, Christa Schleper, Stephan C. Schuster

published 25 Jun 2008

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A Dual Origin of the Xist Gene from a Protein-Coding Gene and a Set of Transposable Elements

Eugeny A. Elisaphenko, Nikolay N. Kolesnikov, Alexander I. Shevchenko, Igor B. Rogozin, Tatyana B. Nesterova, Neil Brockdorff, Suren M. Zakian

published 25 Jun 2008

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Estimation of Isolation Times of the Island Species in the Drosophila simulans Complex from Multilocus DNA Sequence Data

Shannon R. McDermott, Richard M. Kliman

published 18 Jun 2008

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MemBrain: Improving the Accuracy of Predicting Transmembrane Helices

Hongbin Shen, James J. Chou

published 11 Jun 2008

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Pattern of the Divergence of Olfactory Receptor Genes during Tetrapod Evolution

Takushi Kishida

published 11 Jun 2008

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SP⁵: Improving Protein Fold Recognition by Using Torsion Angle Profiles and Profile-Based Gap Penalty Model

Wei Zhang, Song Liu, Yaoqi Zhou

published 04 Jun 2008

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Analysis of the EIAV Rev-Responsive Element (RRE) Reveals a Conserved RNA Motif Required for High Affinity Rev Binding in Both HIV-1 and EIAV

Jae-Hyung Lee, Gloria Culver, Susan Carpenter, Drena Dobbs

published 04 Jun 2008

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Highly Conserved Regimes of Neighbor-Base-Dependent Mutation Generated the Background Primary-Structural Heterogeneities along Vertebrate Chromosomes

Marcos A. Antezana, I. King Jordan

published 14 May 2008

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The Nod-Like Receptor (NLR) Family: A Tale of Similarities and Differences

Martina Proell, Stefan J. Riedl, Jörg H. Fritz, Ana M. Rojas, Robert Schwarzenbacher

published 30 Apr 2008

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Characterization of Clinically-Attenuated Burkholderia mallei by Whole Genome Sequencing: Candidate Strain for Exclusion from Select Agent Lists

Steven E. Schutzer, Linda R. K. Schlater, Catherine M. Ronning, David DeShazer, Benjamin J. Luft, John J. Dunn, Jacques Ravel, Claire M. Fraser-Liggett, William C. Nierman

published 30 Apr 2008

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Evidence for the Intense Exchange of MazG in Marine Cyanophages by Horizontal Gene Transfer

Michael J. Bryan, Nigel J. Burroughs, Edward M. Spence, Martha R. J. Clokie, Nicholas H. Mann, Samantha J. Bryan

published 23 Apr 2008

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Nature of Protein Family Signatures: Insights from Singular Value Analysis of Position-Specific Scoring Matrices

Akira R. Kinjo, Haruki Nakamura

published 09 Apr 2008

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