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Sequence alignment

Extensive HIV-1 Intra-Host Recombination Is Common in Tissues with Abnormal Histopathology

Susanna L. Lamers, Marco Salemi, Derek C. Galligan, Tulio de Oliveira, Gary B. Fogel, Sara C. Granier, Li Zhao, Joseph N. Brown, Alanna Morris, Eliezer Masliah, Michael S. McGrath

published 31 Mar 2009

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Length Variations amongst Protein Domain Superfamilies and Consequences on Structure and Function

Sankaran Sandhya, Saane Sudha Rani, Barah Pankaj, Madabosse Kande Govind, Bernard Offmann, Narayanaswamy Srinivasan, Ramanathan Sowdhamini

published 31 Mar 2009

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Role of 3′UTRs in the Translation of mRNAs Regulated by Oncogenic eIF4E—A Computational Inference

Arti N. Santhanam, Eckart Bindewald, Vinagolu K. Rajasekhar, Ola Larsson, Nahum Sonenberg, Nancy H. Colburn, Bruce A. Shapiro

published 17 Mar 2009

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Identification and Gene Expression Analysis of a Taxonomically Restricted Cysteine-Rich Protein Family in Reef-Building Corals

Shinichi Sunagawa, Michael K. DeSalvo, Christian R. Voolstra, Alejandro Reyes-Bermudez, Mónica Medina

published 13 Mar 2009

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An Anomalous Type IV Secretion System in Rickettsia Is Evolutionarily Conserved

Joseph J. Gillespie, Nicole C. Ammerman, Sheila M. Dreher-Lesnick, M. Sayeedur Rahman, Micah J. Worley, Joao C. Setubal, Bruno S. Sobral, Abdu F. Azad

published 12 Mar 2009

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The Action of Key Factors in Protein Evolution at High Temporal Resolution

Armin Schmitt, Johannes Schuchhardt, Gudrun A. Brockmann

published 12 Mar 2009

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Transcript-Specific Expression Profiles Derived from Sequence-Based Analysis of Standard Microarrays

Anton G. Moll, Maja T. Lindenmeyer, Matthias Kretzler, Peter J. Nelson, Ralf Zimmer, Clemens D. Cohen

published 11 Mar 2009

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Identification of Coevolving Residues and Coevolution Potentials Emphasizing Structure, Bond Formation and Catalytic Coordination in Protein Evolution

Daniel Y. Little, Lu Chen

published 10 Mar 2009

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Structure of the Archaeal Pab87 Peptidase Reveals a Novel Self-Compartmentalizing Protease Family

Vanessa Delfosse, Eric Girard, Catherine Birck, Michaël Delmarcelle, Marc Delarue, Olivier Poch, Patrick Schultz, Claudine Mayer

published 05 Mar 2009

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Computing Highly Correlated Positions Using Mutual Information and Graph Theory for G Protein-Coupled Receptors

Sarosh N. Fatakia, Stefano Costanzi, Carson C. Chow

published 05 Mar 2009

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Are Protein Domains Modules of Lateral Genetic Transfer?

Cheong Xin Chan, Aaron E. Darling, Robert G. Beiko, Mark A. Ragan

published 20 Feb 2009

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Two Chromogranin A-Derived Peptides Induce Calcium Entry in Human Neutrophils by Calmodulin-Regulated Calcium Independent Phospholipase A₂

Dan Zhang, Peiman Shooshtarizadeh, Benoît-Joseph Laventie, Didier André Colin, Jean-François Chich, Jasmina Vidic, Jean de Barry, Sylvette Chasserot-Golaz, François Delalande, Alain Van Dorsselaer, Francis Schneider, Karen Helle, Dominique Aunis, Gilles Prévost, Marie-Hélène Metz-Boutigue

published 19 Feb 2009

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Evidence for Co-Evolution between Human MicroRNAs and Alu-Repeats

Stefan Lehnert, Peter Van Loo, Pushpike J. Thilakarathne, Peter Marynen, Geert Verbeke, Frans C. Schuit

published 11 Feb 2009

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