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Sequence alignment

Improving Phrap-Based Assembly of the Rat Using “Reliable” Overlaps

Michael Roberts, Aleksey V. Zimin, [ ... ], James Yorke

Origin and Evolution of GALA-LRR, a New Member of the CC-LRR Subfamily: From Plants to Bacteria?

Andrey V. Kajava, Maria Anisimova, Nemo Peeters

Recombination and Population Mosaic of a Multifunctional Viral Gene, Adeno-Associated Virus cap

Yasuhiro Takeuchi, Richard Myers, Olivier Danos

Sequence Evidence in the Archaeal Genomes that tRNAs Emerged Through the Combination of Ancestral Genes as 5′ and 3′ tRNA Halves

Kosuke Fujishima, Junichi Sugahara, Masaru Tomita, Akio Kanai

A Three-Stage Colonization Model for the Peopling of the Americas

Andrew Kitchen, Michael M. Miyamoto, Connie J. Mulligan

Accumulating Variation at Conserved Sites in Potyvirus Genomes Is Driven by Species Discovery and Affects Degenerate Primer Design

Linda Zheng, Paul J. Wayper, [ ... ], Mark J. Gibbs

Predicted Functional RNAs within Coding Regions Constrain Evolutionary Rates of Yeast Proteins

Charles D. Warden, Seong-Ho Kim, Soojin V. Yi

An Update on MyoD Evolution in Teleosts and a Proposed Consensus Nomenclature to Accommodate the Tetraploidization of Different Vertebrate Genomes

Daniel J. Macqueen, Ian A. Johnston

The Sorcerer II Global Ocean Sampling Expedition: Metagenomic Characterization of Viruses within Aquatic Microbial Samples

Shannon J. Williamson, Douglas B. Rusch, [ ... ], J. Craig Venter

Polyploidization as a Retraction Force in Plant Genome Evolution: Sequence Rearrangements in Triticale

Miguel Bento, H. Sofia Pereira, [ ... ], Manuela Silva

A High Quality Draft Consensus Sequence of the Genome of a Heterozygous Grapevine Variety

Riccardo Velasco, Andrey Zharkikh, [ ... ], Roberto Viola

Identification of Novel Drosophila melanogaster MicroRNAs

Thomas Sandmann, Stephen M. Cohen

Evolutionarily Conserved Protein Sequences of Influenza A Viruses, Avian and Human, as Vaccine Targets

A. T. Heiny, Olivo Miotto, [ ... ], J. Thomas August

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