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Sequence alignment

Evidence for the Intense Exchange of MazG in Marine Cyanophages by Horizontal Gene Transfer

Michael J. Bryan, Nigel J. Burroughs, Edward M. Spence, Martha R. J. Clokie, Nicholas H. Mann, Samantha J. Bryan

published 23 Apr 2008

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Nature of Protein Family Signatures: Insights from Singular Value Analysis of Position-Specific Scoring Matrices

Akira R. Kinjo, Haruki Nakamura

published 09 Apr 2008

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Alignment of Non-Covalent Interactions at Protein-Protein Interfaces

Hongbo Zhu, Ingolf Sommer, Thomas Lengauer, Francisco S. Domingues

published 02 Apr 2008

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Distinguishing Molecular Features and Clinical Characteristics of a Putative New Rhinovirus Species, Human Rhinovirus C (HRV C)

Peter McErlean, Laura A. Shackelton, Emily Andrews, Dale R. Webster, Stephen B. Lambert, Michael D. Nissen, Theo P. Sloots, Ian M. Mackay

published 02 Apr 2008

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Improving Phrap-Based Assembly of the Rat Using “Reliable” Overlaps

Michael Roberts, Aleksey V. Zimin, Wayne Hayes, Brian R. Hunt, Cevat Ustun, James R. White, Paul Havlak, James Yorke

published 19 Mar 2008

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Origin and Evolution of GALA-LRR, a New Member of the CC-LRR Subfamily: From Plants to Bacteria?

Andrey V. Kajava, Maria Anisimova, Nemo Peeters

published 27 Feb 2008

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Recombination and Population Mosaic of a Multifunctional Viral Gene, Adeno-Associated Virus cap

Yasuhiro Takeuchi, Richard Myers, Olivier Danos

published 20 Feb 2008

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Sequence Evidence in the Archaeal Genomes that tRNAs Emerged Through the Combination of Ancestral Genes as 5′ and 3′ tRNA Halves

Kosuke Fujishima, Junichi Sugahara, Masaru Tomita, Akio Kanai

published 20 Feb 2008

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A Three-Stage Colonization Model for the Peopling of the Americas

Andrew Kitchen, Michael M. Miyamoto, Connie J. Mulligan

published 13 Feb 2008

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Accumulating Variation at Conserved Sites in Potyvirus Genomes Is Driven by Species Discovery and Affects Degenerate Primer Design

Linda Zheng, Paul J. Wayper, Adrian J. Gibbs, Mathieu Fourment, Brendan C. Rodoni, Mark J. Gibbs

published 13 Feb 2008

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Predicted Functional RNAs within Coding Regions Constrain Evolutionary Rates of Yeast Proteins

Charles D. Warden, Seong-Ho Kim, Soojin V. Yi

published 13 Feb 2008

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An Update on MyoD Evolution in Teleosts and a Proposed Consensus Nomenclature to Accommodate the Tetraploidization of Different Vertebrate Genomes

Daniel J. Macqueen, Ian A. Johnston

published 06 Feb 2008

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The Sorcerer II Global Ocean Sampling Expedition: Metagenomic Characterization of Viruses within Aquatic Microbial Samples

Shannon J. Williamson, Douglas B. Rusch, Shibu Yooseph, Aaron L. Halpern, Karla B. Heidelberg, John I. Glass, Cynthia Andrews-Pfannkoch, Douglas Fadrosh, Christopher S. Miller, Granger Sutton, Marvin Frazier, J. Craig Venter

published 23 Jan 2008

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