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Sequence alignment

Computational Analysis and Experimental Validation of Gene Predictions in Toxoplasma gondii

Joseph M. Dybas, Carlos J. Madrid-Aliste, Fa-Yun Che, Edward Nieves, Dmitry Rykunov, Ruth Hogue Angeletti, Louis M. Weiss, Kami Kim, Andras Fiser

published 09 Dec 2008

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Transcriptome-Wide Identification of Novel Imprinted Genes in Neonatal Mouse Brain

Xu Wang, Qi Sun, Sean D. McGrath, Elaine R. Mardis, Paul D. Soloway, Andrew G. Clark

published 04 Dec 2008

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Acquisition and Evolution of Plant Pathogenesis–Associated Gene Clusters and Candidate Determinants of Tissue-Specificity in Xanthomonas

Hong Lu, Prabhu Patil, Marie-Anne Van Sluys, Frank F. White, Robert P. Ryan, J. Maxwell Dow, Pablo Rabinowicz, Steven L. Salzberg, Jan E. Leach, Ramesh Sonti, Volker Brendel, Adam J. Bogdanove

published 27 Nov 2008

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Detecting Clusters of Mutations

Tong Zhou, Peter J. Enyeart, Claus O. Wilke

published 19 Nov 2008

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Evolutionary Patterning: A Novel Approach to the Identification of Potential Drug Target Sites in Plasmodium falciparum

Pierre M. Durand, Kubendran Naidoo, Theresa L. Coetzer

published 10 Nov 2008

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Genomic Convergence Analysis of Schizophrenia: mRNA Sequencing Reveals Altered Synaptic Vesicular Transport in Post-Mortem Cerebellum

Joann Mudge, Neil A. Miller, Irina Khrebtukova, Ingrid E. Lindquist, Gregory D. May, Jim J. Huntley, Shujun Luo, Lu Zhang, Jennifer C. van Velkinburgh, Andrew D. Farmer, Sharon Lewis, William D. Beavis, Faye D. Schilkey, Selene M. Virk, C. Forrest Black, M. Kathy Myers, Lar C. Mader, Ray J. Langley, John P. Utsey, Ryan W. Kim, Rosalinda C. Roberts, Sat Kirpal Khalsa, Meredith Garcia, Victoria Ambriz-Griffith, Richard Harlan, Wendy Czika, Stanton Martin, Russell D. Wolfinger, Nora I. Perrone-Bizzozero, Gary P. Schroth, Stephen F. Kingsmore

published 05 Nov 2008

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FastBLAST: Homology Relationships for Millions of Proteins

Morgan N. Price, Paramvir S. Dehal, Adam P. Arkin

published 31 Oct 2008

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A Computational Screen for Type I Polyketide Synthases in Metagenomics Shotgun Data

Konrad U. Foerstner, Tobias Doerks, Christopher J. Creevey, Anja Doerks, Peer Bork

published 27 Oct 2008

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Prediction of Extracellular Proteases of the Human Pathogen Helicobacter pylori Reveals Proteolytic Activity of the Hp1018/19 Protein HtrA

Martin Löwer, Christiane Weydig, Dirk Metzler, Andreas Reuter, Anna Starzinski-Powitz, Silja Wessler, Gisbert Schneider

published 23 Oct 2008

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Species Specificity in Major Urinary Proteins by Parallel Evolution

Darren W. Logan, Tobias F. Marton, Lisa Stowers

published 25 Sep 2008

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On Evaluating MHC-II Binding Peptide Prediction Methods

Yasser EL-Manzalawy, Drena Dobbs, Vasant Honavar

published 24 Sep 2008

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Genetic Analysis of HIV-1 Subtypes in Nairobi, Kenya

Suhail Khoja, Peter Ojwang, Saeed Khan, Nancy Okinda, Reena Harania, Syed Ali

published 11 Sep 2008

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Horizontal Gene Transfers Link a Human MRSA Pathogen to Contagious Bovine Mastitis Bacteria

Thomas Brody, Amarendra S. Yavatkar, Yong Lin, Jermaine Ross, Alexander Kuzin, Mukta Kundu, Yang Fann, Ward F. Odenwald

published 27 Aug 2008

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