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Sequence alignment

Phylogenetic Detection of Recombination with a Bayesian Prior on the Distance between Trees

Leonardo de Oliveira Martins, Élcio Leal, Hirohisa Kishino

Local Alignment Refinement Using Structural Assessment

Pierre Chodanowski, Aurélien Grosdidier, Ernest Feytmans, Olivier Michielin

Lateral Transfer of a Lectin-Like Antifreeze Protein Gene in Fishes

Laurie A. Graham, Stephen C. Lougheed, K. Vanya Ewart, Peter L. Davies

An Automated Phylogenetic Tree-Based Small Subunit rRNA Taxonomy and Alignment Pipeline (STAP)

Dongying Wu, Amber Hartman, Naomi Ward, Jonathan A. Eisen

Simultaneous Assessment of Soil Microbial Community Structure and Function through Analysis of the Meta-Transcriptome

Tim Urich, Anders Lanzén, [ ... ], Stephan C. Schuster

A Dual Origin of the Xist Gene from a Protein-Coding Gene and a Set of Transposable Elements

Eugeny A. Elisaphenko, Nikolay N. Kolesnikov, [ ... ], Suren M. Zakian

Estimation of Isolation Times of the Island Species in the Drosophila simulans Complex from Multilocus DNA Sequence Data

Shannon R. McDermott, Richard M. Kliman

MemBrain: Improving the Accuracy of Predicting Transmembrane Helices

Hongbin Shen, James J. Chou

Pattern of the Divergence of Olfactory Receptor Genes during Tetrapod Evolution

Takushi Kishida

SP⁵: Improving Protein Fold Recognition by Using Torsion Angle Profiles and Profile-Based Gap Penalty Model

Wei Zhang, Song Liu, Yaoqi Zhou

Analysis of the EIAV Rev-Responsive Element (RRE) Reveals a Conserved RNA Motif Required for High Affinity Rev Binding in Both HIV-1 and EIAV

Jae-Hyung Lee, Gloria Culver, Susan Carpenter, Drena Dobbs

Highly Conserved Regimes of Neighbor-Base-Dependent Mutation Generated the Background Primary-Structural Heterogeneities along Vertebrate Chromosomes

Marcos A. Antezana, I. King Jordan

The Nod-Like Receptor (NLR) Family: A Tale of Similarities and Differences

Martina Proell, Stefan J. Riedl, [ ... ], Robert Schwarzenbacher

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