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Sequence alignment

The Tree versus the Forest: The Fungal Tree of Life and the Topological Diversity within the Yeast Phylome

Marina Marcet-Houben, Toni Gabaldón

published 03 Feb 2009

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Using Sequence Similarity Networks for Visualization of Relationships Across Diverse Protein Superfamilies

Holly J. Atkinson, John H. Morris, Thomas E. Ferrin, Patricia C. Babbitt

published 03 Feb 2009

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Consistency Analysis of Redundant Probe Sets on Affymetrix Three-Prime Expression Arrays and Applications to Differential mRNA Processing

Xiangqin Cui, Ann E. Loraine

published 23 Jan 2009

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Novel Exon of Mammalian ADAR2 Extends Open Reading Frame

Stefan Maas, Willemijn M. Gommans

published 19 Jan 2009

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Structural Model of the Rev Regulatory Protein from Equine Infectious Anemia Virus

Yungok Ihm, Wendy O. Sparks, Jae-Hyung Lee, Haibo Cao, Susan Carpenter, Cai-Zhuang Wang, Kai-Ming Ho, Drena Dobbs

published 12 Jan 2009

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A Method for the Simultaneous Estimation of Selection Intensities in Overlapping Genes

Niv Sabath, Giddy Landan, Dan Graur

published 22 Dec 2008

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Ultraconserved Elements in the Olig2 Promoter

Christina T. L. Chen, David I. Gottlieb, Barak A. Cohen

published 16 Dec 2008

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UPF201 Archaeal Specific Family Members Reveal Structural Similarity to RNA-Binding Proteins but Low Likelihood for RNA-Binding Function

Krishnamurthy N. Rao, Stephen K. Burley, Subramanyam Swaminathan

published 11 Dec 2008

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Computational Analysis and Experimental Validation of Gene Predictions in Toxoplasma gondii

Joseph M. Dybas, Carlos J. Madrid-Aliste, Fa-Yun Che, Edward Nieves, Dmitry Rykunov, Ruth Hogue Angeletti, Louis M. Weiss, Kami Kim, Andras Fiser

published 09 Dec 2008

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Transcriptome-Wide Identification of Novel Imprinted Genes in Neonatal Mouse Brain

Xu Wang, Qi Sun, Sean D. McGrath, Elaine R. Mardis, Paul D. Soloway, Andrew G. Clark

published 04 Dec 2008

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Acquisition and Evolution of Plant Pathogenesis–Associated Gene Clusters and Candidate Determinants of Tissue-Specificity in Xanthomonas

Hong Lu, Prabhu Patil, Marie-Anne Van Sluys, Frank F. White, Robert P. Ryan, J. Maxwell Dow, Pablo Rabinowicz, Steven L. Salzberg, Jan E. Leach, Ramesh Sonti, Volker Brendel, Adam J. Bogdanove

published 27 Nov 2008

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Detecting Clusters of Mutations

Tong Zhou, Peter J. Enyeart, Claus O. Wilke

published 19 Nov 2008

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Evolutionary Patterning: A Novel Approach to the Identification of Potential Drug Target Sites in Plasmodium falciparum

Pierre M. Durand, Kubendran Naidoo, Theresa L. Coetzer

published 10 Nov 2008

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