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Sequence alignment

Quantitative Deep Sequencing Reveals Dynamic HIV-1 Escape and Large Population Shifts during CCR5 Antagonist Therapy In Vivo

Athe M. N. Tsibris, Bette Korber, Ramy Arnaout, Carsten Russ, Chien-Chi Lo, Thomas Leitner, Brian Gaschen, James Theiler, Roger Paredes, Zhaohui Su, Michael D. Hughes, Roy M. Gulick, Wayne Greaves, Eoin Coakley, Charles Flexner, Chad Nusbaum, Daniel R. Kuritzkes

published 25 May 2009

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A New Family of Receptor Tyrosine Kinases with a Venus Flytrap Binding Domain in Insects and Other Invertebrates Activated by Aminoacids

Arnaud Ahier, Philippe Rondard, Nadège Gouignard, Naji Khayath, Siluo Huang, Jacques Trolet, Daniel J. Donoghue, Monique Gauthier, Jean-Philippe Pin, Colette Dissous

published 21 May 2009

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Prospective Identification of Malaria Parasite Genes under Balancing Selection

Kevin K. A. Tetteh, Lindsay B. Stewart, Lynette Isabella Ochola, Alfred Amambua-Ngwa, Alan W. Thomas, Kevin Marsh, Gareth D. Weedall, David J. Conway

published 15 May 2009

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Using Classical Population Genetics Tools with Heterochroneous Data: Time Matters!

Frantz Depaulis, Ludovic Orlando, Catherine Hänni

published 14 May 2009

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To Be or Not to Be a Flatworm: The Acoel Controversy

Bernhard Egger, Dirk Steinke, Hiroshi Tarui, Katrien De Mulder, Detlev Arendt, Gaëtan Borgonie, Noriko Funayama, Robert Gschwentner, Volker Hartenstein, Bert Hobmayer, Matthew Hooge, Martina Hrouda, Sachiko Ishida, Chiyoko Kobayashi, Georg Kuales, Osamu Nishimura, Daniela Pfister, Reinhard Rieger, Willi Salvenmoser, Julian Smith III, Ulrich Technau, Seth Tyler, Kiyokazu Agata, Walter Salzburger, Peter Ladurner

published 11 May 2009

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smyRNA: A Novel Ab Initio ncRNA Gene Finder

Raheleh Salari, Cagri Aksay, Emre Karakoc, Peter J. Unrau, Iman Hajirasouliha, S. Cenk Sahinalp

published 05 May 2009

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The EG95 Antigen of Echinococcus spp. Contains Positively Selected Amino Acids, which May Influence Host Specificity and Vaccine Efficacy

Karen Luisa Haag, Bruno Gottstein, Francisco Jose Ayala

published 29 Apr 2009

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The Chromodomain of LIKE HETEROCHROMATIN PROTEIN 1 Is Essential for H3K27me3 Binding and Function during Arabidopsis Development

Vivien Exner, Ernst Aichinger, Huan Shu, Thomas Wildhaber, Pietro Alfarano, Amedeo Caflisch, Wilhelm Gruissem, Claudia Köhler, Lars Hennig

published 28 Apr 2009

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Integron Gene Cassettes and Degradation of Compounds Associated with Industrial Waste: The Case of the Sydney Tar Ponds

Jeremy E. Koenig, Christine Sharp, Marlena Dlutek, Bruce Curtis, Michael Joss, Yan Boucher, W. Ford Doolittle

published 23 Apr 2009

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Evolutionary Conservation of Orthoretroviral Long Terminal Repeats (LTRs) and ab initio Detection of Single LTRs in Genomic Data

Farid Benachenhou, Patric Jern, Merja Oja, Göran Sperber, Vidar Blikstad, Panu Somervuo, Samuel Kaski, Jonas Blomberg

published 13 Apr 2009

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Mutations in Specific Structural Regions of Immunoglobulin Light Chains Are Associated with Free Light Chain Levels in Patients with AL Amyloidosis

Tanya L. Poshusta, Laura A. Sikkink, Nelson Leung, Raynell J. Clark, Angela Dispenzieri, Marina Ramirez-Alvarado

published 13 Apr 2009

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Extensive HIV-1 Intra-Host Recombination Is Common in Tissues with Abnormal Histopathology

Susanna L. Lamers, Marco Salemi, Derek C. Galligan, Tulio de Oliveira, Gary B. Fogel, Sara C. Granier, Li Zhao, Joseph N. Brown, Alanna Morris, Eliezer Masliah, Michael S. McGrath

published 31 Mar 2009

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Length Variations amongst Protein Domain Superfamilies and Consequences on Structure and Function

Sankaran Sandhya, Saane Sudha Rani, Barah Pankaj, Madabosse Kande Govind, Bernard Offmann, Narayanaswamy Srinivasan, Ramanathan Sowdhamini

published 31 Mar 2009

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