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Sequence alignment

Identification and Gene Expression Analysis of a Taxonomically Restricted Cysteine-Rich Protein Family in Reef-Building Corals

Shinichi Sunagawa, Michael K. DeSalvo, Christian R. Voolstra, Alejandro Reyes-Bermudez, Mónica Medina

published 13 Mar 2009

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An Anomalous Type IV Secretion System in Rickettsia Is Evolutionarily Conserved

Joseph J. Gillespie, Nicole C. Ammerman, Sheila M. Dreher-Lesnick, M. Sayeedur Rahman, Micah J. Worley, Joao C. Setubal, Bruno S. Sobral, Abdu F. Azad

published 12 Mar 2009

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The Action of Key Factors in Protein Evolution at High Temporal Resolution

Armin Schmitt, Johannes Schuchhardt, Gudrun A. Brockmann

published 12 Mar 2009

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Transcript-Specific Expression Profiles Derived from Sequence-Based Analysis of Standard Microarrays

Anton G. Moll, Maja T. Lindenmeyer, Matthias Kretzler, Peter J. Nelson, Ralf Zimmer, Clemens D. Cohen

published 11 Mar 2009

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Identification of Coevolving Residues and Coevolution Potentials Emphasizing Structure, Bond Formation and Catalytic Coordination in Protein Evolution

Daniel Y. Little, Lu Chen

published 10 Mar 2009

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Structure of the Archaeal Pab87 Peptidase Reveals a Novel Self-Compartmentalizing Protease Family

Vanessa Delfosse, Eric Girard, Catherine Birck, Michaël Delmarcelle, Marc Delarue, Olivier Poch, Patrick Schultz, Claudine Mayer

published 05 Mar 2009

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Computing Highly Correlated Positions Using Mutual Information and Graph Theory for G Protein-Coupled Receptors

Sarosh N. Fatakia, Stefano Costanzi, Carson C. Chow

published 05 Mar 2009

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Are Protein Domains Modules of Lateral Genetic Transfer?

Cheong Xin Chan, Aaron E. Darling, Robert G. Beiko, Mark A. Ragan

published 20 Feb 2009

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Two Chromogranin A-Derived Peptides Induce Calcium Entry in Human Neutrophils by Calmodulin-Regulated Calcium Independent Phospholipase A₂

Dan Zhang, Peiman Shooshtarizadeh, Benoît-Joseph Laventie, Didier André Colin, Jean-François Chich, Jasmina Vidic, Jean de Barry, Sylvette Chasserot-Golaz, François Delalande, Alain Van Dorsselaer, Francis Schneider, Karen Helle, Dominique Aunis, Gilles Prévost, Marie-Hélène Metz-Boutigue

published 19 Feb 2009

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Evidence for Co-Evolution between Human MicroRNAs and Alu-Repeats

Stefan Lehnert, Peter Van Loo, Pushpike J. Thilakarathne, Peter Marynen, Geert Verbeke, Frans C. Schuit

published 11 Feb 2009

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The Tree versus the Forest: The Fungal Tree of Life and the Topological Diversity within the Yeast Phylome

Marina Marcet-Houben, Toni Gabaldón

published 03 Feb 2009

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Using Sequence Similarity Networks for Visualization of Relationships Across Diverse Protein Superfamilies

Holly J. Atkinson, John H. Morris, Thomas E. Ferrin, Patricia C. Babbitt

published 03 Feb 2009

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Consistency Analysis of Redundant Probe Sets on Affymetrix Three-Prime Expression Arrays and Applications to Differential mRNA Processing

Xiangqin Cui, Ann E. Loraine

published 23 Jan 2009

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