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Sequence alignment

A Novel Alignment-Free Method for Comparing Transcription Factor Binding Site Motifs

Minli Xu, Zhengchang Su

published 20 Jan 2010

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Sequence and Structural Analysis of the Chitinase Insertion Domain Reveals Two Conserved Motifs Involved in Chitin-Binding

Hai Li, Lesley H. Greene

published 13 Jan 2010

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Rapid Genomic Characterization of the Genus Vitis

Sean Myles, Jer-Ming Chia, Bonnie Hurwitz, Charles Simon, Gan Yuan Zhong, Edward Buckler, Doreen Ware

published 13 Jan 2010

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Structural and Functional Roles of Coevolved Sites in Proteins

Saikat Chakrabarti, Anna R. Panchenko

published 06 Jan 2010

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Extraordinary Molecular Evolution in the PRDM9 Fertility Gene

James H. Thomas, Ryan O. Emerson, Jay Shendure

published 30 Dec 2009

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Contrasting Patterns of Transposable Element Insertions in Drosophila Heat-Shock Promoters

Robert A. Haney, Martin E. Feder

published 29 Dec 2009

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Proteomic Detection of Non-Annotated Protein-Coding Genes in Pseudomonas fluorescens Pf0-1

Wook Kim, Mark W. Silby, Sam O. Purvine, Julie S. Nicoll, Kim K. Hixson, Matt Monroe, Carrie D. Nicora, Mary S. Lipton, Stuart B. Levy

published 24 Dec 2009

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Pebble and Rock Band: Heuristic Resolution of Repeats and Scaffolding in the Velvet Short-Read de Novo Assembler

Daniel R. Zerbino, Gayle K. McEwen, Elliott H. Margulies, Ewan Birney

published 22 Dec 2009

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Molecular Evolution of Drosophila Cuticular Protein Genes

R. Scott Cornman

published 17 Dec 2009

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A High-Throughput DNA Sequence Aligner for Microbial Ecology Studies

Patrick D. Schloss

published 14 Dec 2009

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PALM: A Paralleled and Integrated Framework for Phylogenetic Inference with Automatic Likelihood Model Selectors

Shu-Hwa Chen, Sheng-Yao Su, Chen-Zen Lo, Kuei-Hsien Chen, Teng-Jay Huang, Bo-Han Kuo, Chung-Yen Lin

published 07 Dec 2009

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Effective Identification of Conserved Pathways in Biological Networks Using Hidden Markov Models

Xiaoning Qian, Byung-Jun Yoon

published 07 Dec 2009

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Characterization of Genes Encoding Poly(A) Polymerases in Plants: Evidence for Duplication and Functional Specialization

Lisa R. Meeks, Balasubrahmanyam Addepalli, Arthur G. Hunt

published 26 Nov 2009

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