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Sequence alignment

Candidate historical events for the emergence of Human Coronavirus OC43: A critical reassessment of the molecular evidence

Brandon Shaw, Derek Gatherer

published 08 May 2023

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Mirage2’s high-quality spliced protein-to-genome mappings produce accurate multiple-sequence alignments of isoforms

Alexander J. Nord, Travis J. Wheeler

published 08 May 2023

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Allele mining, amplicon sequencing and computational prediction of Solanum melongena L. FT/TFL1 gene homologs uncovers putative variants associated to seed dormancy and germination

Ranjita Subramaniam, Vijay Subbiah Kumar

published 03 May 2023

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Insights from a workplace SARS-CoV-2 specimen collection program, with genomes placed into global sequence phylogeny

Owen P. Leiser, Deanna L. Auberry, Erica Bakker, Will Chrisler, Kristin Engbrecht, Heather Engelmann, Sarah Fansler, Vincent Gerbasi, Joshua Hansen, Chelsea Hutchinson, Janine Hutchison, Mary J. Lancaster, Kathleen Lawrence, Angela Melville, Jennifer Mobberley, Isabelle O’Bryon, Kristie L. Oxford, Tessa Oxford, Shelby Phillips, Kabrena E. Rodda, James A. Sanford, Athena Schepmoes, Brian E. Staley, Kelcey Terrell, Kristin Victry, Cynthia Warner, Kristin M. Omberg

published 28 Apr 2023

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Potential contribution of Helicobacter pylori proteins in the pathogenesis of type 1 gastric neuroendocrine tumor and urticaria. In silico approach

Andrés Sánchez Caraballo, Yenny Guzmán, Jorge Sánchez, Marlon Munera, Elizabeth Garcia, Deyanira Gonzalez-Devia

published 25 Apr 2023

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A comprehensive performance analysis of sequence-based within-sample testing NIPT methods

Tom Mokveld, Zaid Al-Ars, Erik A. Sistermans, Marcel Reinders

published 14 Apr 2023

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Designed and validated novel allele-specific primer to differentiate Kernel Row Number (KRN) in tropical field corn

Ganapati Mukri, Kumari Shilpa, R. N. Gadag, Jayant S. Bhat, Chandu Singh, Navin C. Gupta, Chandra Prabha, Sahana Police Patil

published 12 Apr 2023

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Characterizing nrDNA ITS1, 5.8S and ITS2 secondary structures and their phylogenetic utility in the legume tribe Hedysareae with special reference to Hedysarum

Haniyeh Nafisi, Akram Kaveh, Shahrokh Kazempour-Osaloo

published 12 Apr 2023

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Demystifying Cassiopea species identity in the Florida Keys: Cassiopea xamachana and Cassiopea andromeda coexist in shallow waters

Kaden Muffett, Maria Pia Miglietta

published 29 Mar 2023

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Comparison of whole transcriptome sequencing of fresh, frozen, and formalin-fixed, paraffin-embedded cardiac tissue

Stine Bøttcher Jacobsen, Jacob Tfelt-Hansen, Morten Holdgaard Smerup, Jeppe Dyrberg Andersen, Niels Morling

published 29 Mar 2023

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Telomerase RNA plays a major role in the completion of the life cycle in Ustilago maydis and shares conserved domains with other Ustilaginales

Juan Antonio Sanpedro-Luna, José Juan Jacinto-Vázquez, Estela Anastacio-Marcelino, Carmen María Posadas-Gutiérrez, Iván Olmos-Pineda, Jesús Antonio González-Bernal, Moisés Carcaño-Montiel, Leticia Vega-Alvarado, Candelario Vázquez-Cruz, Patricia Sánchez-Alonso

published 23 Mar 2023

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Multi-faceted metagenomic analysis of spacecraft associated surfaces reveal planetary protection relevant microbial composition

Sarah K. Highlander, Jason M. Wood, John D. Gillece, Megan Folkerts, Viacheslav Fofanov, Tara Furstenau, Nitin K. Singh, Lisa Guan, Arman Seuylemezian, James N. Benardini, David M. Engelthaler, Kasthuri Venkateswaran, Paul S. Keim

published 22 Mar 2023

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Complete chloroplast genome sequences of Myristicaceae species with the comparative chloroplast genomics and phylogenetic relationships among them

Changli Mao, Fengliang Zhang, Xiaoqin Li, Tian Yang, Qi Zhao, Yu Wu

published 20 Mar 2023

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