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Sequence alignment

Evaluation of an optimized germline exomes pipeline using BWA-MEM2 and Dragen-GATK tools

Nofe Alganmi, Heba Abusamra

published 03 Aug 2023

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Analysis of gene duplication within the Arabidopsis NUCLEAR FACTOR Y, subunit B (NF-YB) protein family reveals domains under both purifying and diversifying selection

Chamindika L. Siriwardana, Jan R. Risinger, Emily Mills Carpenter, Ben F. Holt III

published 02 Aug 2023

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STRategy: A support system for collecting and analyzing next-generation sequencing data of short tandem repeats for forensic science

Nuttachai Kulthammanit, Tikumphorn Sathirapatya, Poonyapat Sukawutthiya, Hasnee Noh, Kornkiat Vongpaisarnsin, Duangdao Wichadakul

published 17 Jul 2023

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The difficulty of aligning intrinsically disordered protein sequences as assessed by conservation and phylogeny

Andrew C. Riley, Daniel A. Ashlock, Steffen P. Graether

published 13 Jul 2023

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On closing the inopportune gap with consistency transformation and iterative refinement

Mario João Jr., Alexandre C. Sena, Vinod E. F. Rebello

published 13 Jul 2023

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A unique single nucleotide polymorphism in Agouti Signalling Protein (ASIP) gene changes coat colour of Sri Lankan leopard (Panthera pardus kotiya) to dark black

M. G. C. Sooriyabandara, A. U. Bandaranayake, H. A. B. M. Hathurusinghe, S. M. Jayasundara, M. S. R. R. P. Marasinghe, G. A. T. Prasad, V. P. M. K. Abeywardana, M. A. Pinidiya, R. M. R. Nilanthi, P. C. G. Bandaranayake

published 13 Jul 2023

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Comparative study of multiple approaches for identifying cultivable microalgae population diversity from freshwater samples

Amal A. Badr, Walid M. Fouad

published 07 Jul 2023

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Recombinant expression and preliminary characterization of Peptidyl-prolyl cis/trans-isomerase Rrd1 from Saccharomyces cerevisiae

Mohd Kashif, Ahad Amer Alsaiari, Bhupendra Kumar, Mohd Asalam, Mohammad Imran Khan, Abrar Ahmad, Rayees Ahmad Lone, Mazen Almehmadi, Mazin A. Zamzami, Mohd Sohail Akhtar

published 13 Jun 2023

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Crystal structure of the kinase domain of a receptor tyrosine kinase from a choanoflagellate, Monosiga brevicollis

Teena Bajaj, John Kuriyan, Christine L. Gee

published 13 Jun 2023

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Bioinformatics characterization of BcsA-like orphan proteins suggest they form a novel family of pseudomonad cyclic-β-glucan synthases

Andrew J. Spiers, Helge C. Dorfmueller, Robyn Jerdan, Jessica McGregor, Abbie Nicoll, Kenzie Steel, Scott Cameron

published 02 Jun 2023

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PyKleeBarcode: Enabling representation of the whole animal kingdom in information space

Wandrille Duchemin, David S. Thaler

published 02 Jun 2023

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Genome analysis of biosurfactant producing bacterium, Bacillus tequilensis

Anuraj Nayarisseri, Sanjeev Kumar Singh

published 02 Jun 2023

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Differences in the 3’ intergenic region and the V2 protein of two sequence variants of tomato curly stunt virus play an important role in disease pathology in Nicotiana benthamiana

Alexander M. Zwolinski, Alison Brigden, Marie E. C. Rey

published 23 May 2023

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